Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15f10
(667 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 119 2e-27
01_06_0515 - 29959149-29959253,29959510-29959633,29959702-299597... 99 2e-21
10_08_0252 - 16191136-16191279,16191639-16191750,16191833-161919... 85 5e-17
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 84 8e-17
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 64 1e-10
11_01_0412 + 3131673-3131903,3133192-3133971 29 2.5
11_04_0400 - 17250302-17250489,17250584-17250910,17251111-17251423 28 5.8
03_06_0264 + 32738224-32738553,32739298-32739768,32739864-327400... 28 5.8
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 5.8
08_02_0299 + 15487202-15487227,15487369-15487491,15488277-154883... 28 7.7
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 28 7.7
01_06_1619 + 38692301-38692405,38693013-38693622,38693753-386938... 28 7.7
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 119 bits (287), Expect = 2e-27
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Frame = +2
Query: 344 GDSSTVAEQNGEKRIGCAHYKRRAKFVTPCCNKVYICRYCHDE----NEQHYFNRKTVTE 511
GD+ G+ GC HY+RR K V PCC +V+ CR+CH++ ++H R+ V +
Sbjct: 17 GDAVVPLRDVGKMEHGCEHYRRRCKIVAPCCGEVFACRHCHNDATASGDRHTICRQDVEK 76
Query: 512 LICTECDTRQKVQPECQNCGVRFGKYTCLICNLFDDE-DKKQYHCDGCGICRV 667
++C CDT Q V C NCGV G+Y C +C +DD+ +K Q+HC CGICRV
Sbjct: 77 VVCLLCDTEQPVSQVCINCGVNMGEYFCDVCKFYDDDTEKGQFHCYDCGICRV 129
>01_06_0515 -
29959149-29959253,29959510-29959633,29959702-29959793,
29959921-29960003,29960573-29960654,29960707-29960784,
29960875-29960967,29961647-29961734,29961822-29961991
Length = 304
Score = 99 bits (238), Expect = 2e-21
Identities = 46/117 (39%), Positives = 69/117 (58%), Gaps = 9/117 (7%)
Frame = +2
Query: 299 IPDYIMSKEKSESVNGDSSTVAEQNGEKRIGCAHYKRRAKFVTPCCNKVYICRYCHDENE 478
+ D + EK+E V+ D E+ G + GCAHY+RR + PCCN+++ CR+CH+E +
Sbjct: 28 LSDEKYATEKTEDVDPDDYEKLEE-GIMQYGCAHYRRRCRIRAPCCNEIFDCRHCHNETK 86
Query: 479 ---------QHYFNRKTVTELICTECDTRQKVQPECQNCGVRFGKYTCLICNLFDDE 622
+H R V ++IC+ C T Q+V+ C +CGV GKY C +C LFDD+
Sbjct: 87 NSIKIDAVKRHELPRHEVQQVICSLCGTEQEVRQVCISCGVCMGKYFCEVCKLFDDD 143
>10_08_0252 -
16191136-16191279,16191639-16191750,16191833-16191924,
16192564-16192641,16192764-16192796,16193712-16193771,
16193912-16193999,16194155-16194180
Length = 210
Score = 85.0 bits (201), Expect = 5e-17
Identities = 36/87 (41%), Positives = 48/87 (55%), Gaps = 9/87 (10%)
Frame = +2
Query: 389 GCAHYKRRAKFVTPCCNKVYICRYCHDE---------NEQHYFNRKTVTELICTECDTRQ 541
GC HY R + PCC +V+ CR+CH+E N++H R + ++IC+ CD Q
Sbjct: 9 GCEHYTRGCRIRAPCCGEVFGCRHCHNEAKNSLEIHLNDRHEIPRHEIKKVICSLCDKEQ 68
Query: 542 KVQPECQNCGVRFGKYTCLICNLFDDE 622
VQ C CG GKY C CN FDD+
Sbjct: 69 DVQQYCSGCGACMGKYFCEKCNFFDDD 95
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 84.2 bits (199), Expect = 8e-17
Identities = 39/96 (40%), Positives = 49/96 (51%)
Frame = +2
Query: 374 GEKRIGCAHYKRRAKFVTPCCNKVYICRYCHDENEQHYFNRKTVTELICTECDTRQKVQP 553
G GC HY+RR + PCCN V+ CR+CH+E + +IC CDT Q V
Sbjct: 12 GRMGFGCKHYRRRCRIRAPCCNDVFHCRHCHNE-----------STVICLVCDTEQPVAQ 60
Query: 554 ECQNCGVRFGKYTCLICNLFDDEDKKQYHCDGCGIC 661
C NCGV G+Y C C FDD+ C C +C
Sbjct: 61 VCYNCGVCMGEYFCSACKFFDDD----VRCRCCLLC 92
>01_06_0319 - 28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Frame = +2
Query: 317 SKEKSESVNGDSSTVAEQNGEKRI-GCAHYKRRAKFVTPCCNKVYICRYCHDENEQHYFN 493
S+E SE + ++ EK+I GC HYKR K V CCNK++ CR+CHD+ H
Sbjct: 964 SEECSEGAGIPGCAPSYRDQEKQIFGCEHYKRNCKLVAACCNKLFTCRFCHDKISDHTME 1023
Query: 494 RKTVTELICTECDTRQKVQPECQNCGVRFGKYTCLICN 607
R + E DT V GV F + C+ CN
Sbjct: 1024 RILMLPDHTRESDTGDDV----HGLGVDF--FHCMKCN 1055
>11_01_0412 + 3131673-3131903,3133192-3133971
Length = 336
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 449 ICRYC-HDENEQHYFNRKTVTELICTECD 532
IC +C HD +EQ+ N + E+IC C+
Sbjct: 96 ICTHCLHDGSEQNEDNDENEVEIICNTCN 124
>11_04_0400 - 17250302-17250489,17250584-17250910,17251111-17251423
Length = 275
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/58 (32%), Positives = 24/58 (41%)
Frame = -3
Query: 479 VRFHHDSNGRCTLCYSMESQTSLAVCNEHSLCVFHRFVQQLWNYRRLHFLTFPSTLCS 306
VR + DSN R T S +S T C F Q L + L FP +LC+
Sbjct: 100 VRMNKDSNRRRTHWKSWDSLTKPKQCGGMGFRDIRLFNQALLARQAWRLLEFPDSLCA 157
>03_06_0264 +
32738224-32738553,32739298-32739768,32739864-32740007,
32740570-32740671,32741758-32741873,32741959-32742028,
32742308-32742376,32742898-32742948,32743038-32743196
Length = 503
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -1
Query: 568 TVLAFWLHLLSCVALGAYQLCNSLPIEIVLF 476
++L F L + SCV LG +SLP EIV +
Sbjct: 248 SLLLFLLTVFSCVELGIASKISSLPPEIVTY 278
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = -3
Query: 371 FVQQLWNYRRLHFLTFPSTLCSLEYKPITFNKSSRS 264
FV+ L + RL L+F +CS+ P+T N ++RS
Sbjct: 2258 FVKCLQDNNRLVLLSFRFAVCSIVLPPLTQNLNNRS 2293
>08_02_0299 +
15487202-15487227,15487369-15487491,15488277-15488397,
15488572-15488700,15489954-15490063,15490139-15490322,
15491155-15491346,15492190-15492411,15492501-15492687,
15494009-15494103
Length = 462
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 524 ECDTRQKVQPE-CQNCGVRFGKYTCLICNLFDDEDKKQYHCDGC 652
E D+R +Q C NC R+ + L + DE +HC+ C
Sbjct: 152 ELDSRNTIQHYICPNCKKRYSAFDALQLISYTDE---YFHCENC 192
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 392 CAHYKRRAKFVTPCCNKVYICRYCHDENE 478
C+ ++RRA C+ CRY H E E
Sbjct: 57 CSFFRRRAASSADGCSHGDSCRYAHSEEE 85
>01_06_1619 +
38692301-38692405,38693013-38693622,38693753-38693829,
38693999-38694817
Length = 536
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 341 NGDSSTVAEQNGEKRIGCAHYKRRAK 418
+GDS+ V Q G IGCAH +A+
Sbjct: 204 HGDSAKVKNQEGFYMIGCAHLPDKAQ 229
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,982,214
Number of Sequences: 37544
Number of extensions: 339648
Number of successful extensions: 867
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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