Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15f07
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0609 - 18929600-18929646,18929753-18929924,18930304-189304...    31   0.54 
02_03_0320 + 17677809-17677929,17678203-17678289,17678657-176787...    28   6.7  
03_02_0408 - 8205897-8205932,8206026-8206055,8207035-8207133,820...    27   8.9  

>09_04_0609 -
           18929600-18929646,18929753-18929924,18930304-18930498,
           18930691-18930801,18930885-18931097,18931643-18931720,
           18931894-18932001,18932175-18932316,18932413-18933761,
           18934492-18935121
          Length = 1014

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 461 HPLSSCLQCLPPFHLLFLIYSFPC 390
           H +  C++C+P  H+ FL+ SF C
Sbjct: 801 HVIQKCIECIPLEHIGFLVSSFQC 824


>02_03_0320 +
           17677809-17677929,17678203-17678289,17678657-17678763,
           17679903-17679981,17680574-17680754,17681290-17681411,
           17681541-17681677
          Length = 277

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 90  INKIKTGGSINQKWPETEVLNGGGQDH 170
           I + KT   + Q   +TE++NGGG  H
Sbjct: 240 IRRNKTDSLVGQSDGDTEMINGGGSSH 266


>03_02_0408 -
           8205897-8205932,8206026-8206055,8207035-8207133,
           8208084-8208156,8208765-8208964
          Length = 145

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +3

Query: 339 RAALR--NVTAKTKIDVTKTRKRVDQKKKMKWRKT 437
           RAA R  NV A+  + + + RKR+  K + KWRKT
Sbjct: 49  RAARRMANVAARAAMVMVRNRKRI--KDRGKWRKT 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,413,967
Number of Sequences: 37544
Number of extensions: 167783
Number of successful extensions: 305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)