Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15f04
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    66   3e-11
07_03_0571 - 19602755-19603831                                         62   4e-10
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850...    31   0.62 
07_03_1697 - 28795521-28797328,28797430-28797550                       29   2.5  
03_06_0737 + 35879723-35879990,35880105-35880201,35880464-358805...    29   3.3  
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893...    28   7.6  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 3/133 (2%)
 Frame = +3

Query: 123 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 302
           +A+  R+KSV+NIQKIT++MKMV+A+K    +   + +R   +    F       P  D 
Sbjct: 60  RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116

Query: 303 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLSEPGAENIKVICVGDKSRGILQRLYGK 473
            K + VA+TSD+GLCG +++    VSK +    S P  E+ K + +G+K +  L R    
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175

Query: 474 HIISVANEIGRLP 512
           +I    +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
 Frame = +3

Query: 117 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 293
           +L+ +  R+ SV+N QKIT++MK+V+AAK  RA+  + ++RP+ E  V+  Y   +    
Sbjct: 37  SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96

Query: 294 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIK--VICVGD 437
           ED            K   V +T +RGLCG+ +  V K    R+ E     ++  V+ VG 
Sbjct: 97  EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156

Query: 438 KSRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSGYEFGSGKI--IYNKFK 605
           K      R   +  I      E+  + PT  D+  +   + +        K+  +Y+KF 
Sbjct: 157 KGNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212

Query: 606 SVV 614
           S+V
Sbjct: 213 SLV 215


>11_02_0119 -
           8502455-8503015,8503311-8504009,8504512-8504571,
           8504744-8504800
          Length = 458

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 21/79 (26%), Positives = 35/79 (44%)
 Frame = -3

Query: 509 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 330
           E ++  SN ++ L   ++ D     S  + LDVL    +  VAD +    +  +A+ +  
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164

Query: 329 GHSNKQLLGVIFGRCNLSP 273
             +    LG I G C  SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183


>07_03_1697 - 28795521-28797328,28797430-28797550
          Length = 642

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -3

Query: 647 SVEGQVGLGVRDHRLELVVNDLSGTK-LVSRGEDSSGQLTCVQESRWETSDLISNTND 477
           S    +G G+  H   L  +D++ T       + SSGQ      SR ET DL+S  N+
Sbjct: 53  SAPSSLGSGLPPHSKHLGSSDVASTSGSTPEAQISSGQQGADMTSRRETDDLVSARNN 110


>03_06_0737 +
           35879723-35879990,35880105-35880201,35880464-35880591,
           35880686-35880767,35880855-35880918,35880930-35881022,
           35881120-35881178,35881391-35881826,35882050-35882120,
           35882201-35882351
          Length = 482

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -1

Query: 400 GSLRRLRITLDTPVCTAPHKPLSEVIAT---NNCLGSSSGGVTSA 275
           GSL+R R++        PH   S  I     + C+GSS  G TSA
Sbjct: 337 GSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCMGSSGHGSTSA 381


>04_03_0620 -
           18088287-18088495,18089174-18089210,18089315-18089395,
           18089771-18089838,18093361-18094219
          Length = 417

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 20  FIADLQNVGTLRTGCRHPSRGGGLPSA 100
           +IAD  NVG L +GC    R G + SA
Sbjct: 126 YIADKDNVGKLMSGCVSACRRGDVTSA 152


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,639
Number of Sequences: 37544
Number of extensions: 452146
Number of successful extensions: 1372
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)