Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15f04
(664 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 202 1e-52
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 202 1e-52
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 168 4e-42
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 31 0.96
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 31 0.96
AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical ... 30 1.3
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 3.9
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 3.9
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 29 3.9
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 29 3.9
Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical pr... 28 6.8
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 28 6.8
U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical pr... 28 6.8
U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical pr... 28 6.8
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 202 bits (494), Expect = 1e-52
Identities = 103/190 (54%), Positives = 133/190 (70%), Gaps = 4/190 (2%)
Frame = +3
Query: 105 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 275
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 276 -AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 452
E ++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKSR
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAG 142
Query: 453 LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSD 632
LQRLY I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+VVSY S
Sbjct: 143 LQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSK 202
Query: 633 LPLYTXKSIE 662
L + ++I+
Sbjct: 203 LQILPLEAIK 212
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 202 bits (494), Expect = 1e-52
Identities = 103/190 (54%), Positives = 133/190 (70%), Gaps = 4/190 (2%)
Frame = +3
Query: 105 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 275
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 276 -AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 452
E ++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKSR
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAG 142
Query: 453 LQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSD 632
LQRLY I+ NEIGR PP+F DAS A AIL SGY+F +G I++N+FK+VVSY S
Sbjct: 143 LQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYETSK 202
Query: 633 LPLYTXKSIE 662
L + ++I+
Sbjct: 203 LQILPLEAIK 212
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 168 bits (408), Expect = 4e-42
Identities = 87/154 (56%), Positives = 107/154 (69%), Gaps = 4/154 (2%)
Frame = +3
Query: 105 RNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER--- 275
R ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNIDP 82
Query: 276 -AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 452
E ++ KQ+ V +TSDRGLCG VH+ + K +N L+ G + I+V+ +GDKSR
Sbjct: 83 VVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAG 142
Query: 453 LQRLYGKHIISVANEIGRLPPTFLDASQLATAIL 554
LQRLY I+ NEIGR PP+F DAS A AIL
Sbjct: 143 LQRLYANSILLSGNEIGRAPPSFADASIAAKAIL 176
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 512 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 339
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 338 SVRGHSNK 315
V HSNK
Sbjct: 131 LVAKHSNK 138
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 30.7 bits (66), Expect = 0.96
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 512 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 339
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 338 SVRGHSNK 315
V HSNK
Sbjct: 131 LVAKHSNK 138
>AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical
protein K09H9.2 protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 225 LKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR 383
L RP+ + + + E +P DP F+ ++ D + GA G S IR
Sbjct: 63 LSKNRPFDQAMNKTMTKMEFSPDYSDPSSEFMLLSVDESVIGAFSEGQSLTIR 115
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 527 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 366
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 527 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 366
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 129 WPSK*PYSCLADGKPPPRLGCRHPVRSVPTFCKSAINVATSV 4
+PS P ADG P R P R VP F +A N+ V
Sbjct: 10 YPSVDPNHFGADGNPCYDRATRQPQRCVPDFVNAAFNLEVQV 51
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +3
Query: 423 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATA 548
+CV D G R K SV I LPPT L + QLATA
Sbjct: 75 LCVFDIDTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATA 116
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 28.7 bits (61), Expect = 3.9
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +3
Query: 423 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATA 548
+CV D G R K SV I LPPT L + QLATA
Sbjct: 75 LCVFDIDTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATA 116
>Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical
protein C54G4.2 protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 545 SGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISH 429
S +T ES +TSDLIS+ D + +F+SH
Sbjct: 64 SASITPSTESTMKTSDLISSIGDHTEGEPSNGNTKFVSH 102
>Z66499-6|CAA91299.2| 765|Caenorhabditis elegans Hypothetical
protein T01B7.6 protein.
Length = 765
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/58 (32%), Positives = 25/58 (43%)
Frame = -1
Query: 442 DLSPTQITLMFSAPGSLRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGGVTSALS 269
D T M + G LR + TPV +PL +N LGSS G ++S S
Sbjct: 544 DFKMTSSIPMTNGLGHLRLGSVWSGTPVEAKQEEPLHYFQQQDNFLGSSFGPISSTFS 601
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 510 PPTFLDASQLATAILTSGYEFGSGKI 587
PPTF D + A + GY FG KI
Sbjct: 3 PPTFADLGKSAKDLFNKGYNFGFLKI 28
>U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical
protein C10G6.1b protein.
Length = 569
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 300 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 413
+PK+L + +RGL VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical
protein C10G6.1a protein.
Length = 574
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 300 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAEN 413
+PK+L + +RGL VS +++NRL+E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,940
Number of Sequences: 27780
Number of extensions: 362333
Number of successful extensions: 1017
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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