Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15e24
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical pr...    67   7e-12
AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>U23169-6|AAC46695.1|  393|Caenorhabditis elegans Hypothetical
           protein C29H12.2 protein.
          Length = 393

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 32/62 (51%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = +3

Query: 342 LALMMLVTGSINSLSTKWADILKSKGSDGEERYFNHPFLQTLSMFLGEMLCLLVFKLVY- 518
           +++MM+VTGS+N++  KWAD +K+ G       FNHPFLQ   MF GE LCL+VF L++ 
Sbjct: 8   ISVMMVVTGSLNTICAKWADSIKADGVP-----FNHPFLQATCMFFGEFLCLVVFFLIFG 62

Query: 519 YK 524
           YK
Sbjct: 63  YK 64


>AL023851-2|CAA19555.2|  209|Caenorhabditis elegans Hypothetical
           protein Y68A4B.2 protein.
          Length = 209

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 568 FVFPAVNECPPVFRV-L*YTNLNTSKHSISPKNIDKV-CKNGWLKYLSSPSDPF 413
           F+FP VN C P  +V    T   T+  + S      + C  GW +    PS P+
Sbjct: 5   FIFPVVNSCIPTQQVETTSTTTTTTTTTTSTTTTTPIPCPTGWAQSDERPSGPW 58


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 315 MAWTNYQKFLALMMLVTGSINSLST 389
           ++WT++   LAL++ VTG I S++T
Sbjct: 571 VSWTSFGHILALVLAVTGIITSMAT 595


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical
           protein F45H11.4 protein.
          Length = 1243

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 315 MAWTNYQKFLALMMLVTGSINSLST 389
           ++WT++   LAL++ VTG I S++T
Sbjct: 571 VSWTSFGHILALVLAVTGIITSMAT 595


>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = -1

Query: 514 TNLNTSKHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISAHF 389
           T+++T+K  +  K+ D  C NGW  +  + ++PF F + + +
Sbjct: 429 TSMSTTK-KVCAKS-DLKCANGWTSFNRTSTNPFCFKVISSY 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,345,814
Number of Sequences: 27780
Number of extensions: 273087
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)