Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15e19
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...   283   1e-77
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    29   0.73 
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    27   1.7  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   9.0  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score =  283 bits (694), Expect = 1e-77
 Identities = 129/191 (67%), Positives = 157/191 (82%)
 Frame = +2

Query: 56  KYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYGSS 235
           KYS+LLPTYNER+NLPII +LI K  D+  +D+E++IIDD SPDGT EVA++LQK+YG  
Sbjct: 3   KYSVLLPTYNERKNLPIITYLIAKTFDQEKLDWEIVIIDDASPDGTQEVAKELQKIYGED 62

Query: 236 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 415
           KI+L+PR  KLGLGTAYIHG++ A+G+F+IIMDAD SHHPK++PEFIKLQ +++YDIV G
Sbjct: 63  KILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDADFSHHPKYLPEFIKLQKEHNYDIVLG 122

Query: 416 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSK 595
           TRY   GGVYGW+ KRK ISRGAN L   +L  GVSD+TGSFRLYKK VLE L+    SK
Sbjct: 123 TRYAKDGGVYGWNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTSK 182

Query: 596 GYVFQMEMIIR 628
           GYVFQME+I R
Sbjct: 183 GYVFQMEIIAR 193


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 EAWSRNCLHSWDTASFWKFYY 324
           E +++NC   WD++ FWK ++
Sbjct: 41  EKYAKNCNTIWDSSKFWKQFF 61


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +2

Query: 5   VETIQVMEVDSGLIKRDKYSILLPTYNERENLPIIIWLI---IKYLDESGVDYEVIIIDD 175
           VE   + ++D  +IK  K    LP  +   N P +   I    K+L +    ++VII D 
Sbjct: 112 VEEAILCDIDEDVIKVSKQ--YLPEMSAGFNHPKVKVHIGDGFKFLQDYQNTFDVIITDS 169

Query: 176 GSPDGTSEVARQ 211
             PDG +E   Q
Sbjct: 170 SDPDGPAEALFQ 181


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = +1

Query: 187 WDFRSGASAAEALWLL*NSASTSRDEAWSRNCLHSWDTASF-WKFYYYNGCGFEPSSKVH 363
           W++    S  E  WL   S S   D     N + S++  SF W ++  N   F    +  
Sbjct: 279 WNYWFTISTEEKTWL---SQSVDAD----MNPVFSFEHLSFIWNYFDANSNAFSWLLRFD 331

Query: 364 SRVHQTPIKI*LRYCLWYSLQGEWW 438
           S+V     +  L   LW SL  + W
Sbjct: 332 SQVRMEQFQELLMRALWESLNQQRW 356


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 71  LPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSE 199
           LP+Y E EN+P  I    + LD +   + V+I +   P+G  E
Sbjct: 22  LPSYGEDENVPQNIRRCYQLLDMTSRSFAVVIKE--LPNGIRE 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,673
Number of Sequences: 5004
Number of extensions: 51742
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)