Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15e19
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 242 2e-64
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853... 56 2e-08
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876... 30 1.3
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948... 30 1.3
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864... 29 3.0
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 29 3.0
05_03_0553 - 15389376-15389499,15391167-15391576 28 5.3
10_01_0318 + 3493913-3496976,3497064-3497392 27 9.3
08_01_0263 + 2141679-2141835,2142033-2142448 27 9.3
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 27 9.3
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 242 bits (592), Expect = 2e-64
Identities = 117/210 (55%), Positives = 157/210 (74%), Gaps = 17/210 (8%)
Frame = +2
Query: 50 RDKYSILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQLQKLYG 229
R +YSI++PTYNER N+ +I++LI K+L + V++E+I++DDGSPDGT ++ +QLQ++YG
Sbjct: 9 RREYSIIVPTYNERLNVALIVYLIFKHLPD--VNFEIIVVDDGSPDGTQDIVKQLQQIYG 66
Query: 230 SSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFI----------- 376
++++LR R KLGLGTAY+HG++ ASG+F++IMDADLSHH I E +
Sbjct: 67 ENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHMLEISETLEQSPLQLDSYQ 126
Query: 377 ------KLQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGS 538
K Q + D+V+GTRY +GGV+GW+ RKL SRGAN L Q +L+PG SDLTGS
Sbjct: 127 GYYTDKKKQKETGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGS 186
Query: 539 FRLYKKEVLEKLILSCVSKGYVFQMEMIIR 628
FRLYK+ VLE LI SCVSKGYVFQMEMI+R
Sbjct: 187 FRLYKRNVLEDLISSCVSKGYVFQMEMIVR 216
>03_06_0489 -
34284301-34284336,34285104-34285227,34285307-34285371,
34285472-34285555,34285661-34285789,34285887-34285976,
34286116-34286250,34286939-34286984,34287119-34287225,
34287355-34287412,34287524-34287765
Length = 371
Score = 56.4 bits (130), Expect = 2e-08
Identities = 34/102 (33%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Frame = +2
Query: 53 DKY-SILLPTYNERENLPIIIWLIIKYLDE-SGVD----YEVIIIDDGSPDGTSEVARQL 214
+KY S+++P YNE LP + + YL + S V+ YEV+I+DDGS D TS+VA +
Sbjct: 111 EKYISLIIPAYNEEHRLPEALTETLNYLKQRSAVEKSFTYEVLIVDDGSTDHTSKVAFEF 170
Query: 215 QKLYGSSKIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDAD 340
+ + + + G G A G+ + G ++++DAD
Sbjct: 171 VRKHKIDNVRVLLLGRNHGKGEAVRKGMLHSRGELLLMLDAD 212
>06_03_1488 +
30484904-30485134,30485239-30487159,30487255-30487691,
30487777-30487983
Length = 931
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -3
Query: 304 LLYPMNVGSSETKLHLARSKHYFRGAIELLQLT 206
+L P V + T LHL++S YFR +E +++T
Sbjct: 637 ILSPFIVAQASTVLHLSKSNLYFRPDLERIRIT 669
>03_02_0565 -
9484045-9484335,9484621-9484686,9484790-9484867,
9485005-9485157,9485271-9485356,9485445-9485551,
9485685-9485752,9485890-9485912,9487627-9487732,
9487772-9487899,9487989-9488065,9488126-9488131,
9488206-9488264
Length = 415
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 320 IIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYG 448
+I D DL HH F P LQ + S Y G +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198
>10_08_0042 -
14383143-14383628,14383647-14384609,14384697-14386443,
14387901-14388010,14388767-14389003
Length = 1180
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = +2
Query: 5 VETIQVMEVDSGLIKRDKYSILLPTYNERENLPIIIWLIIKYLDESGV 148
+E +VM VD + YS+L+ + +R ++ ++WL ++ ++ GV
Sbjct: 315 LEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWL-LREMEAHGV 361
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 29.1 bits (62), Expect = 3.0
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Frame = +2
Query: 65 ILLPTYNERENLPIIIWLIIKYLDESGVDYEVIIIDDGSPDGTSEVARQ--LQKLYGSSK 238
+ +P NE+E I + LD ++ V ++DD T + R+ L+ ++
Sbjct: 247 VQIPMCNEKEVYQQSIAAVCN-LDWPRSNFLVQVLDDSDDPTTQTLIREEVLKWQQNGAR 305
Query: 239 IVLRPREMKLGLGTAYIHGIQQASG----NFIIIMDADLSHHPKFI 364
IV R R ++ G + S F+ I DAD +P F+
Sbjct: 306 IVYRHRVLRDGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPNPDFL 351
>05_03_0553 - 15389376-15389499,15391167-15391576
Length = 177
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/60 (30%), Positives = 33/60 (55%)
Frame = -3
Query: 499 LSQKVSSPRYELTLEVPAVDSTTPLVTSTRDNIVIIF*LEFDELWNELWMMAQIRIHYNN 320
L Q+V SP E + + + +PL+ S + F L +++W +LW++AQ + HY +
Sbjct: 39 LQQQVLSPYNEFVRQQYGI-TASPLLQS------VAFQLRNNQVWQQLWLVAQ-QSHYED 90
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 328 YNNKISRSLLYPMNVGSSETKLHLARSKHYFRGAI 224
YNN + L + + ++ LH+ ++++FRGAI
Sbjct: 449 YNNNFTGELPQELGLNTTPGLLHIDLTRNHFRGAI 483
>08_01_0263 + 2141679-2141835,2142033-2142448
Length = 190
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -2
Query: 86 HCKLVVKLSIYLFLSIPNPPP 24
HC +KL + SIP+PPP
Sbjct: 107 HCDAGMKLEVRTLCSIPSPPP 127
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 254 REMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDI 406
R+ K ++H AS +I I D DL E+IKL KY +I
Sbjct: 192 RQAKWWYAKRFLHPDIVASYEYIFIWDEDLGVEHFNAEEYIKLVKKYQLEI 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,360,276
Number of Sequences: 37544
Number of extensions: 320226
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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