Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15e12
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 36 0.007
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 28 1.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 27 2.6
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 27 2.6
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 26 4.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 6.0
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb... 26 6.0
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.9
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 25 7.9
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 7.9
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 35.5 bits (78), Expect = 0.007
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Frame = +2
Query: 374 PKLPSMSVKASEGPTGSLE--PGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPL--GATP 541
PK+ + K E LE PG F + W I NT + WP + GG+ L G P
Sbjct: 270 PKVLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNP 329
Query: 542 VYLPPLPVGH-----STTVTLKLVAPSTSGTHKSFFHLVTD 649
P H + TV LK+ S +FF++ +D
Sbjct: 330 YSFPITSSVHPGEDVNFTVALKVPEKSNKEIFTAFFNICSD 370
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 474 EQNNGQVVVD*YKLVVNLLALHLFIYHP-FLLDIPQQLH 587
E+++G ++V +++V N+L + YHP ++D+ LH
Sbjct: 516 ERSSGNILVVSHRIVSNILMTYFLNYHPEDIIDVGLPLH 554
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 284 SLNYNTASFFLDMSNWNLQAAI 349
S++Y TA +L +NWN+Q A+
Sbjct: 1165 SVSYQTAEQYLSGNNWNVQNAL 1186
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 239 DREELIKQMQKLLGPSLNYNTASFFLDMSNWNLQAAICCYLDYTSPK 379
DRE+++K+ +++ + FFL+ +NWN + A + P+
Sbjct: 2 DREDILKEFCNR--NNIDVSQGRFFLESTNWNYELATALLHEVIPPE 46
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +2
Query: 356 YLDYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGTEQW-PGCCRLIQAGGE 523
Y+ Y P M KA+ P+ L PG W + T W G + I G E
Sbjct: 215 YMGYYIHTCPKMKYKATYSPSYLLNPGT---NKWIPIENFTSLWNTGAPKYISFGDE 268
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -3
Query: 522 SPPACINLQQPGHCSVPVLTILQF*SKRAPGSKLP-VGPSDAFTDIEGSFGDV 367
+PPA ++ P +VPV +++ +++ P S P PS + SF V
Sbjct: 1477 APPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHV 1529
>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1283
Score = 25.8 bits (54), Expect = 6.0
Identities = 22/107 (20%), Positives = 45/107 (42%)
Frame = +2
Query: 299 TASFFLDMSNWNLQAAICCYLDYTSPKLPSMSVKASEGPTGSLEPGARFDQNWSIVNTGT 478
T + +++N Q+ Y YTS LP+ ++ S P ++ + N + +
Sbjct: 145 TTELIIPTTSYNNQSHTLIYSTYTSTYLPNSTIDLSILPHSTISTLSTVSINDTSASLSK 204
Query: 479 EQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGT 619
P + + + + Y P +T+ T+++V P T+GT
Sbjct: 205 TTSPTAGTITET---IVSGSVGYTSTFPASGTTSGTVEVVEP-TAGT 247
>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 342 LLYVAI*IIHHQSFLQCQ*KHLKVQLVVWNL 434
LLY+ + ++S L + KHLK QL+V NL
Sbjct: 726 LLYMLEDVSRNKSQLLAEKKHLKSQLMVANL 756
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 242 REELIKQMQKLLGPSLNYNTASFFLDMSNWNLQAA 346
R+ L+K + K++ + N ASFF +S +L+AA
Sbjct: 28 RKFLVKLLSKIVIGASESNVASFFAFVSEKSLEAA 62
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 533 ATPVYLPPLPVGHSTTVTLKLVAPSTSGTHK 625
+TPV++PP ST +T + +P G H+
Sbjct: 20 STPVHIPPPINSESTRITPQHGSPPRFGDHR 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,261
Number of Sequences: 5004
Number of extensions: 57152
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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