Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15e11
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    28   1.4  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   3.3  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    27   3.3  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    27   3.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   4.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.3  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   4.3  
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S...    26   5.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   7.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.5  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   9.9  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    25   9.9  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    25   9.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   9.9  

>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 336 KKKVNSVNN----SDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKPDETR 500
           +KK NS++N    S++  + S ++N  ++    SS  SKHL +     N   + PD T+
Sbjct: 272 QKKSNSIDNLTPSSELFRKRSRDNNLSRE----SSVSSKHLDYNSRNYNKRDRDPDRTK 326


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 99  LRDCIVKFKSDSKSYLQMVVLEDGGMMATNPNQYLQPDYLAPLPSTLDSK 248
           LR  I+K+K  + SYL    L  G    +     LQP  L P  S  + K
Sbjct: 19  LRSQIIKYKYSNVSYLNKSALRCGQATDSTHPHILQPGELTPRISAQEYK 68


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/61 (27%), Positives = 27/61 (44%)
 Frame = +3

Query: 243 SKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPR 422
           SKK        + SQ    S+ S     P +  K+N V  +  +S + P    +K+D P+
Sbjct: 349 SKKKHTGPSLSSASQPSAASSSSSS--EPSNLDKINDVKKNIEVSANEPQPRPVKEDVPK 406

Query: 423 S 425
           S
Sbjct: 407 S 407


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 672 SGADYRGLFQMNWLKKILFHLKDCFFH 592
           +G + + L +M  LKK+L  +++C FH
Sbjct: 859 AGFNVKRLMKMQILKKLLTAMRNCLFH 885


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 234 TLDSKKSPLALLAQTCSQIGVD-STPSKPLLPPHDKKKVNSVNNSDI--ISRSSPNSNTM 404
           T D+    ++    +  Q  VD +TPS P +P H K K+++  ++ +   S  S     +
Sbjct: 311 TEDNYNKDVSDAQNSLGQSAVDLTTPSSPPIPRHTKPKLSTTQSTPVKPASLQSEEDIQL 370

Query: 405 KQDKPRSSPESKHL 446
              +P  S  S  L
Sbjct: 371 SFKQPELSASSAEL 384


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
 Frame = +3

Query: 141 YLQMVVLEDGGMMATNPNQYLQPDYLAPLPS-TLDSKKSPLALLAQTCSQIGVDSTPSKP 317
           Y QM  L   G+   N     QP YLAP+PS T+ +    L++ + +  Q  + +  ++ 
Sbjct: 193 YPQMPSLNQPGLHIVN-----QPTYLAPVPSATVPTNSVSLSMPSFSQGQKNIPAAINQE 247

Query: 318 LLPPHDKKKVNSVNN----SDIISRSSPNSNTMKQDKPRSSPES 437
           +     K+  N ++        I  + P+   M  D  +S+ ES
Sbjct: 248 MSVGTTKENTNYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMES 291


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +3

Query: 243 SKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPR 422
           + K+  + L+   S   +   P  PL+    +      +N    S S P+SN +K D   
Sbjct: 488 NNKNDESSLSPAKSHAVITQAPKIPLISTFTRLSTRKSSNDFNSSNSRPSSNALKSDANE 547

Query: 423 SSPES 437
           ++  S
Sbjct: 548 NTDSS 552


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%)
 Frame = +3

Query: 165 DGGMMATNPNQYLQPDYLAPLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKK 344
           D  +  T P+       +A  P+  +  K P+    Q  S+  V  TPS       +K+K
Sbjct: 541 DQPIKVTEPSNDADKAIVAEGPNNEEETKGPVIPETQETSEQQVHKTPSP------EKQK 594

Query: 345 VNS----VNNSDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKP 488
           V S    + N D  + +S  ++     KP S+P+   L      ++V+T  P
Sbjct: 595 VLSPPPIITNFDKETLASNEAHEAVPQKP-SAPQVTRLMAPQDSSSVVTPSP 645


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/56 (21%), Positives = 27/56 (48%)
 Frame = +3

Query: 222 PLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSP 389
           P P+   +   P  + + T   + +D+TP  P L P       + +++  +++S+P
Sbjct: 372 PNPTLAPNPTGPSRVTSGTEDLLSLDATPFSPTLAPQHTSSNATKHSAPPVTKSAP 427


>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
           Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 118

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 126 SDSKSYLQMVVLEDGGMMATNPNQYLQPDYLAPLPSTL 239
           S SKSY+   V+    M     +  ++  YL PLPSTL
Sbjct: 73  SRSKSYVSEPVIHLNVMEPLYVDHRIRSVYLQPLPSTL 110


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/79 (21%), Positives = 32/79 (40%)
 Frame = +3

Query: 252 SPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDIISRSSPNSNTMKQDKPRSSP 431
           SP + +      +G +S  +        + K ++ NN+   S     S + K    R + 
Sbjct: 235 SPRSSIVNGPRTLGKNSKRADDTARMASRMKPSNFNNNIQSSSYGHASQSTKLTSQRDND 294

Query: 432 ESKHLAFKPYEANVITKKP 488
             K L F PY++  +  +P
Sbjct: 295 HQKDLNFSPYKSIPLNNRP 313


>SPCC1235.05c |fft2||fun thirty related protein
            Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +3

Query: 342  KVNSVNNSDIISRSSPNSNTMKQDKPRSSPESKHLAFKPYEANVITKKPDET 497
            KV+S NNS        N+    +    +S E   LA    +AN+ T+   ET
Sbjct: 1113 KVSSSNNSKQTDAEETNTGVPLEGSQPNSVEKTDLADGDEKANIKTEMKSET 1164


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 21/97 (21%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
 Frame = +3

Query: 210 DYLAPLPSTLDSKKSPL--ALLAQTCSQIGVDSTPSKPLLPPHDK-KKVNSVNNSDIISR 380
           ++  PLP   D+K SP   A +   C     D+  +  +   + K  ++ S+ +  ++S 
Sbjct: 219 NFFCPLPENKDNKSSPFGSATVQTPCLHSVPDAFTNPDVATLYQKFLRLQSLEHQRLVSC 278

Query: 381 SSPNS--NTMKQDKPRSSPESKHLAFKPYEANVITKK 485
           S  NS  +T+      S  ++++    PY    +  K
Sbjct: 279 SDRNSQWSTVDSLSNTSYKKNRYTDIVPYNCTRVHLK 315


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 17  LRTSPRAHVSYLLSLRSVCKVYTKL 91
           L  SP+ HVS+L  L++  ++  KL
Sbjct: 491 LACSPKTHVSFLFLLKTATQLLNKL 515


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
 Frame = +3

Query: 192 NQYLQPDYLAPLPSTLDSKKSPLALLAQTCSQIGVDSTPSKPLLPPHDKKKVNSVNNSDI 371
           N+YLQ   L    S+           AQ         T S P+ PP    +  S++N   
Sbjct: 158 NRYLQNSELLDRNSSTFGSNPNSVFSAQPTEPSVEPPTSSFPIQPPLPPSRSISISNPQS 217

Query: 372 ISRSS----PNSNTMKQDKPRSSPESKHL 446
           +S  S     N N      P+ +P  +HL
Sbjct: 218 LSFPSSFDQSNYNFQAASTPQFNPLIEHL 246


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 143 SPNGGA*RRWNDGYKSQPVLTTRLFSTASVHFGLEKKPAC 262
           S +G   R W+D Y S P+ T +     +   GLE   AC
Sbjct: 384 SSHGRLVRIWDDRYGSAPLHTIKTSENITKINGLEFNRAC 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,370
Number of Sequences: 5004
Number of extensions: 61407
Number of successful extensions: 230
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)