Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15e08
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.072
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.67 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.67 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.88 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.7  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.2  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.3 bits (60), Expect = 0.072
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
 Frame = +2

Query: 32  PPAGSFRQASESYRTATAPMEGAVTPEGGRRTTRAALAEIPGFLDRL----RVTPLQTLT 199
           PP      +S S R+A +PM   V P        A     P  L +     R  PL  + 
Sbjct: 441 PPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAALTGTYPTLLPQWCLPPREAPLVGVQ 500

Query: 200 NTRD-LSPALPAGYLSPAP-SPDEQLIQQRGRKRLPVTWSPEIDIKRNSSFHSSVRTPPK 373
             +D  +PA     LS  P +  +  I    ++++P+  +  ID K  S F+S  R  P+
Sbjct: 501 PHQDSATPADQPLDLSAKPKNSQDNNISLLEQQKIPLRMTAGIDPK--SIFNSGYRPKPR 558

Query: 374 IT 379
           ++
Sbjct: 559 MS 560


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = +2

Query: 335  NSSFHSSVRTPPKITPGRISPPKLGVTLRSTPRKRLLMGETERIPLTPEKIDFSDI-STP 511
            N+  HS +     +T G  SPP    +++S   +R      +R   TP  ++  +  S P
Sbjct: 1734 NTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRR----RQQRKQQTPGDVESDESESDP 1789

Query: 512  QKFKLNNQECSIKNTPPMKRSRVEKVLDKEYRGPIDTALKGLSP 643
             +   +  E S       K   +  V D  Y G   T+   +SP
Sbjct: 1790 DQLTSSRTESS-NQLDAGKLKHIRAVSDFIYHGTSSTS-SDISP 1831


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 1/104 (0%)
 Frame = +2

Query: 335  NSSFHSSVRTPPKITPGRISPPKLGVTLRSTPRKRLLMGETERIPLTPEKIDFSDI-STP 511
            N+  HS +     +T G  SPP    +++S   +R      +R   TP  ++  +  S P
Sbjct: 1730 NTLLHSFMYHEHAMTEGCASPPPAATSMKSVSSRR----RQQRKQQTPGDVESDESESDP 1785

Query: 512  QKFKLNNQECSIKNTPPMKRSRVEKVLDKEYRGPIDTALKGLSP 643
             +   +  E S       K   +  V D  Y G   T+   +SP
Sbjct: 1786 DQLTSSRTESS-NQLDAGKLKHIRAVSDFIYHGTSSTS-SDISP 1827


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 185 LQTLTNTRDLSPALPAGYLSPAPSPDEQLIQQRGRKRLPVTWSPEIDIKR 334
           L T  ++  L+P  P GY+ P     E+LI +    +       E D+KR
Sbjct: 310 LSTSGSSGILTPVSPYGYVKPISPEQEELIHRLVYFQNEYEQPSEEDLKR 359


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = -2

Query: 324 SISGDHVTGSRLRPLCCISCSSGDGAGLR*PAGSAGDRSLVLVRVCSGVTRSRSKKPGIS 145
           S +G  VTG+    +   + + G G GL   +G +   SLV+V V          +  + 
Sbjct: 25  SSAGGVVTGASGGSIVVGANNGGGGGGLGIASGLSAMLSLVVVTVAISTGEWLLTEEKLP 84

Query: 144 ASAARVVRRPPSGVTAPSIGAVAV 73
            +++     P S VT   +  V V
Sbjct: 85  KTSSNASVEPDSKVTYSGLWRVCV 108


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 180 VTRSRSKKPGISASAARVVRRPPSGVTAPS 91
           + RSRS++     S++ V RR PS   +PS
Sbjct: 16  IIRSRSRRYSKRFSSSIVDRRSPSSSRSPS 45


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 459 RESH*HQRKSTSAILARHRSSN*TIKNA 542
           R+   H++K +  ILA +  ++ T+KNA
Sbjct: 68  RKDKEHKKKKSKTILAVNAEADITLKNA 95


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 459 RESH*HQRKSTSAILARHRSSN*TIKNA 542
           R+   H++K +  ILA +  ++ T+KNA
Sbjct: 68  RKDKEHKKKKSKTILAVNAEADITLKNA 95


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 447 ISRRLRGVDRNVTPSLGGE 391
           ISR L G D  + P+ GGE
Sbjct: 41  ISRILDGYDIRLRPNFGGE 59


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 83   LLRSDKIPMLAGRILQVDPFVN 18
            LL SDKI  + G   Q + FVN
Sbjct: 1511 LLGSDKIKFVPGTTSQPEVFVN 1532


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -1

Query: 214 QVPCVGEGLQRSHPQPVQEARDLGERGSR 128
           QVP  G  +  S P P  E     + GSR
Sbjct: 111 QVPQQGASIDDSDPDPSSEPTVHSQSGSR 139


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 435 LRGVDRNVTPSLGG 394
           LRG D +V P  GG
Sbjct: 14  LRGYDNSVRPDFGG 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,257
Number of Sequences: 438
Number of extensions: 5168
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)