Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15e05
(719 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0437 - 9399982-9401253 31 0.92
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380... 30 1.6
04_04_1559 - 34428286-34429062 30 2.1
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 6.5
08_02_0641 + 19639211-19639366,19640376-19640882 28 6.5
08_01_1033 - 10461135-10461377,10462124-10462354,10465853-104663... 28 6.5
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 28 6.5
01_01_1137 + 9017211-9018584 28 6.5
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548... 28 8.6
06_03_0685 - 23499779-23500204 28 8.6
06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390 28 8.6
03_03_0054 + 14115511-14115515,14115844-14115921,14116004-141160... 28 8.6
>09_02_0437 - 9399982-9401253
Length = 423
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 303 SGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFIC 205
S ++VA SRG + + +AAG P C P +C
Sbjct: 112 SSWSVADSRGSLVLLRSLAAGHAPFCFPEVVVC 144
>04_03_0655 +
18436363-18436901,18436984-18437772,18437952-18438028,
18438034-18438248
Length = 539
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 376 RLVLLPLVLAHPGNRRAAPPGIRL*TGNR*FETKRSVPEPRKVHVPLELYSGNV 537
R +L+P A P RRA PG+ + N R VP R+VH+ L S V
Sbjct: 258 RALLVPRHPAEP-RRRAGRPGVCIHDANPVVVLFRDVPRLRRVHLSFSLDSSTV 310
>04_04_1559 - 34428286-34429062
Length = 258
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 283 QQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGGEEKEEMRLYRQQA 143
++G RR +S GRD ++ H H R+ R G + ++ R +A
Sbjct: 110 ERGAERRRESCERGRDRRIRTSHHHPRRIRATVGRRDDRIQARRSEA 156
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/58 (34%), Positives = 26/58 (44%)
Frame = -3
Query: 375 VITDISSMNTSFLCAGQ*STT*PKSGFAVAHSRGRIAVTIPIAAGVTPSCRPNTFICG 202
V T + M LCAG + T + FA A + G A+ +AAG P R CG
Sbjct: 720 VATGMEGMAGRVLCAGMAAVTGAMAEFADASADGYDALVSAVAAG-APGRRKEEPTCG 776
>08_02_0641 + 19639211-19639366,19640376-19640882
Length = 220
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 221 GRQLGVTPAAMGIVTAILPLLWATAKPLFGY 313
G +LGV+P A+G +T ++ A + PL Y
Sbjct: 133 GAELGVSPTALGSLTLCRAIVQAASYPLAAY 163
>08_01_1033 -
10461135-10461377,10462124-10462354,10465853-10466336,
10466566-10466822
Length = 404
Score = 28.3 bits (60), Expect = 6.5
Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Frame = -1
Query: 431 GAARRFPGWARTRGNSTSRS*PILAA*ILASCAPANNLQRSRRVASQSPTAGA---ESPS 261
GAA W R G+S PI AA SC P R V +A A S
Sbjct: 76 GAAHAVAAWIRGYGSSAPEPEPIAAAYSAGSCCPRLRKLRLVSVVGLRSSAVARRRRSLQ 135
Query: 260 RFPSLRA 240
+FP RA
Sbjct: 136 QFPRNRA 142
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 350 ILASCAPANNLQRSRRVASQSPTAGAESPSRFPSLRA*LPV 228
+ A+ +P+ +++R+ A+ SP+ A PS RA LPV
Sbjct: 541 VQAAASPSRSVRRAAASAAPSPSLAACQVPEAPSARAPLPV 581
>01_01_1137 + 9017211-9018584
Length = 457
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -3
Query: 294 AVAHSRGRIAVTIPIAAGVTPSCRPNTFICGNSGPRAAKKKKKCAFTGSKLLLI 133
A HS R+ VT +A P RP GP A + A G++ L+
Sbjct: 8 AACHSPARLVVTCSSSATPAPPRRPLRVAVVGGGPAGASAAEALASAGAQAFLL 61
>11_04_0291 -
15851647-15852252,15853995-15854136,15854666-15854881,
15854957-15855052,15855147-15855259,15856516-15856727,
15856842-15856939,15857066-15857186,15857291-15857508,
15857657-15857837,15857919-15858207,15858303-15858367,
15858480-15858591
Length = 822
Score = 27.9 bits (59), Expect = 8.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 639 TSLKSMFRVRQVEFVTSLSKYAVSIRVVFRRYTSNVPGVQFQW-HV 505
T + S+FR+R+VEF A S R F Y S G + W HV
Sbjct: 201 TDIDSIFRLREVEFERDAGGTA-SARKAFMAYVSEGLGREQDWDHV 245
>06_03_0685 - 23499779-23500204
Length = 141
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -2
Query: 313 VAEEWLRSRPQQGQNRRHDSHRCGRDSQLPPEHIHLRQQRPQGG 182
VA E +R RP +G R R GR LPP + ++ P+GG
Sbjct: 33 VAVERIRLRPPRGGRIRRWPPRRGRIRGLPPLGGRICRRPPRGG 76
>06_01_0910 - 7016932-7017759,7018059-7018351,7018952-7019390
Length = 519
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 219 SGGNWESRPQ-RWES*RRF-CPCCG 287
SGGNW +RP WE RR C CG
Sbjct: 320 SGGNWFNRPNYLWEGGRRVGCVKCG 344
>03_03_0054 +
14115511-14115515,14115844-14115921,14116004-14116078,
14116295-14116374,14117141-14117175,14117362-14117530,
14117849-14118129
Length = 240
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 475 KRSVPEPRKVHVPLELYSGNVRCVP 549
+RS PR++HVP + + G + +P
Sbjct: 168 RRSRANPRRIHVPKDAWPGGISALP 192
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,793,854
Number of Sequences: 37544
Number of extensions: 441522
Number of successful extensions: 1270
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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