Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15e01
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    32   0.064
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    32   0.084
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    30   0.34 
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom...    27   2.4  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    26   4.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    26   4.2  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   5.5  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.3  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   7.3  
SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr 2|...    25   7.3  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    25   7.3  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 32.3 bits (70), Expect = 0.064
 Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
 Frame = +1

Query: 175  VCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLE-GVCDRIL 351
            V K+  ++LQN ++   K  E+I     L  ++ KK  +  +S  R+I  L+ G+ ++ +
Sbjct: 1156 VMKLGLSDLQNHVKRISKEMEIISCQRQLLFLENKKLKRTVESSNRVIADLQRGITEKDV 1215

Query: 352  EYNIHK--ERSDSTRFAKGMSQTFKTLHGLVDKGVKV--DLGIPLELWDKPSAEITHMKT 519
                    ERS+       ++++ K+L   +++  +V  +L   +E      A     K 
Sbjct: 1216 SSTSESVGERSNYLNMVALLNESNKSLRENLERNEEVITELREKIETLKTDLANFRLNKE 1275

Query: 520  QCESLLEENEIAVE 561
            Q ES L+  + AV+
Sbjct: 1276 QLESQLQTEKAAVK 1289


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 31.9 bits (69), Expect = 0.084
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +1

Query: 118 DNDIKSEEDVGVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQ 297
           + +I S++ +   +  +CE C +   ELQN   E  K+ E  +  +       K+     
Sbjct: 288 EKEISSQKQISELWMEKCEDCSLRLKELQNSNGELEKLLEAAQSSFEEQLESHKEAEASL 347

Query: 298 KSELRLIE 321
           KS++  +E
Sbjct: 348 KSQINFLE 355


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 22/63 (34%), Positives = 34/63 (53%)
 Frame = +1

Query: 169 CEVCKILATELQNRLEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVCDRI 348
           C + K      Q+ +E+ G + EVI    S+  ++ K KT  +K ELR   +L  V DR+
Sbjct: 79  CLIVKDSQQTYQDLVEQQG-LDEVITKVLSIPRLKLKYKTIREKCELRDSHNLFLVDDRV 137

Query: 349 LEY 357
           L+Y
Sbjct: 138 LKY 140


>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 595

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = -2

Query: 595 DLLYLDGSNTSLRRLFRSLLKGFHIVFSYG*FQQKVYPTAPMVFRDPLLHLYLRDREGS* 416
           DL+   G N  ++ L RSL +G           + +     +V R+P + L ++D+E S 
Sbjct: 174 DLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFI-LAVKDKEASG 232

Query: 415 MFDSFLWQILYYRTFLCEYCI 353
               ++ +      FL  Y +
Sbjct: 233 KLTQYVVKCSEQDKFLLAYIL 253


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 190 ATELQNRLEETGKVHEVIEIGYSLDDVQPKK-KTKYQKSELRLIESLEGVCD 342
           AT LQN+  + G V    E   S  D+Q K+ K+  + + L  I S  G+ D
Sbjct: 364 ATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSIEENNSLPPIVSTNGITD 415


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 578 WFQYQSSTAISFSSKRLSHCVFIWVISAEGLSHSSNGIPRSTFT 447
           WF+       S++  +    +F W    EGL +S +G+P   F+
Sbjct: 105 WFEVHIRLPKSWA--KYEQVIFQWNCDNEGLVYSQDGVPLQAFS 146


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 211 LEETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGV 336
           L E  K +  + + Y+     PKKK +  K E  L+ ++EG+
Sbjct: 115 LSERAKQYGRLGVDYAQVGDAPKKKIREMKLENGLLRNVEGI 156


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 242 LKSDTPSTMFNQKRKRNIRN 301
           LKSD  S   N +RKRN++N
Sbjct: 877 LKSDLKSIRNNNERKRNLQN 896


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 445 GVKVDLGIPLELWDKPSAEITHMKTQCESLLE 540
           G+K  +G PL +W +    +  ++ +CE + E
Sbjct: 359 GIKGTVGFPLPIWVEIKGFVARIRFRCELMPE 390


>SPBC3H7.10 |||elongator homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 379 DSTRFAKGMSQTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCES 531
           DST+  + + +  K    ++   V V LG PL       + I HM T+C S
Sbjct: 141 DSTKIQQAILELRKCFSRVI---VNVTLGAPLPQQKSLGSSIGHMATRCIS 188


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 406 SFLWQILYYRTFLCEYCIPIFYHTHPLKIRLTLIQISDISFSF 278
           S LW   Y R F  E C+ +F      K R  L +  +  FS+
Sbjct: 220 SELWDPRYIRVFKRENCVEVFVENVLTKKRRKLWRRKEDKFSY 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,780
Number of Sequences: 5004
Number of extensions: 52623
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)