Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15e01
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0124 + 901034-901153,901455-901481,901713-901792,903739-90... 44 8e-05
04_04_1441 - 33621423-33622118,33622251-33622315,33623140-336232... 31 1.1
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.3
02_05_1293 - 35520733-35520963,35521696-35521878,35522040-355222... 29 4.3
01_06_1763 + 39723596-39723691,39724030-39724672,39724773-397252... 29 4.3
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332... 28 7.6
05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371 28 7.6
02_05_1332 + 35758657-35758728,35758959-35760689 28 7.6
>02_01_0124 +
901034-901153,901455-901481,901713-901792,903739-903811,
904015-904072,904561-904615,905140-905164,905361-905421,
907416-907531,907661-907812,907918-908003,908182-908309,
908451-908501,908774-908860,908964-909033,909351-909407,
909729-909865,910313-910390,910971-911057
Length = 515
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Frame = +1
Query: 163 NRCEVCKILATELQNRLE-ETGKVHEVIEIGYSLDDVQPKKKTKYQKSELRLIESLEGVC 339
++C CK +A EL+ + E + H + + + K Y+ SELR++E L+G+C
Sbjct: 31 DKCAACKAVAAELEIGISSEKPRNHLDLRNRLNSKGQREGKVIDYRVSELRVVELLDGLC 90
Query: 340 DRILEYNIHKERSDSTRFAKGMS-QTFKT 423
D++ +Y + K S + K +FKT
Sbjct: 91 DKMQDYTLQKLESGEKGWVKVADWNSFKT 119
>04_04_1441 -
33621423-33622118,33622251-33622315,33623140-33623227,
33623957-33625570
Length = 820
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 241 IEIGYSLDDVQPKKKTKYQKSELRLIE-SLEGVCDRILEYNIHKERSDSTRFAK 399
+E G LD+V+ +KK K + + L+E EG D E + KE+ + + K
Sbjct: 314 VENGMDLDEVKVEKKKKKKAKKASLVEGETEGAKDSKQEKKVKKEKKEKKKKKK 367
>10_06_0105 -
10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 409 QTFKTLHGLVDKGVKVDLGIPLELWDKPSAEITHMKTQCESLLEE 543
Q F G +G+ LG+ L ++ SAE++ ++T+C +L E
Sbjct: 380 QDFTDKLGTETQGLAQQLGVELMSRNQLSAEVSSLRTECSNLKRE 424
>02_05_1293 -
35520733-35520963,35521696-35521878,35522040-35522255,
35522936-35523022,35523125-35523331,35523426-35523650,
35523743-35523798,35524009-35524115,35524443-35525470
Length = 779
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 623 ACFVHKYILRSSLP*WFQYQSSTAISFSSKRLSHCVF 513
A F + +++ P W+Q+ SS+AI +K S C F
Sbjct: 139 AAFNPRRDFQTAAPWWWQWSSSSAIPSRTKEASFCFF 175
>01_06_1763 +
39723596-39723691,39724030-39724672,39724773-39725275,
39725786-39725905,39726356-39726421,39727146-39727256,
39727650-39727726,39727996-39728063,39728384-39728497,
39728593-39728774,39728926-39728994,39729294-39729449,
39729657-39729734
Length = 760
Score = 28.7 bits (61), Expect = 4.3
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
Frame = +1
Query: 280 KKTKYQKSELRLIESLEGVCDRILEY-----NIHKERSDSTRFAKGMSQTFKTLHGLVDK 444
K + + SEL+L + +EG+ I Y ++ KER + + + K LH K
Sbjct: 513 KALRLRSSELKLEKEIEGLSSEISSYRRKVSSLEKERQHLQSTVEALQEEKKLLH---SK 569
Query: 445 GVKVDLGIPLELWDKPSAEITHMKTQCESL 534
+ + + +KPSA+ T E L
Sbjct: 570 LRNTSVTEKVNIIEKPSADKRDASTATEDL 599
>11_06_0148 +
20631949-20632338,20632838-20633044,20633168-20633267,
20633478-20633560,20633656-20633712,20633790-20633942,
20634016-20634094,20634279-20634427,20634541-20634675,
20634783-20634896,20635065-20635175,20635338-20635373,
20635675-20635884
Length = 607
Score = 27.9 bits (59), Expect = 7.6
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -3
Query: 585 TLMVPIPVFDGYFVLF*KAFTLCFHM----GDFSRRFIPQLQWYSEIHFYTFIYETVKGL 418
+L P+ +F +F + TL +++ GD +R+FI Q S I FI TV L
Sbjct: 211 SLEEPLYLFGQFFQKPLECLTLAYYLPQNAGDIARKFIKDQQLLSFIDAECFIVSTVNAL 270
Query: 417 K 415
+
Sbjct: 271 Q 271
>05_02_0164 - 7240739-7243051,7243902-7244036,7244322-7245371
Length = 1165
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/36 (27%), Positives = 24/36 (66%)
Frame = +1
Query: 67 KLICILALLSRNVICRDDNDIKSEEDVGVKYANRCE 174
KL +++ ++ + D+++I + ED+G+K +RC+
Sbjct: 386 KLHTVMSYIAAFWVTTDESEICALEDIGMKIVDRCD 421
>02_05_1332 + 35758657-35758728,35758959-35760689
Length = 600
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +1
Query: 88 LLSRNVICRDDNDIKSEEDV--GVKYANRCEVCKILATELQNRLEETGKVHEVIEIGYSL 261
++ N + + E+DV G + ++ A + LEE V E Y +
Sbjct: 505 IVGMNTEGNGEEAFQPEDDVVYGDSLSPADDIAAEAADDASRELEEQQDVETAEEYDYEM 564
Query: 262 DDVQPKKKTKYQKSE 306
DDV ++ YQ+ E
Sbjct: 565 DDVNAAEENDYQEYE 579
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,569,388
Number of Sequences: 37544
Number of extensions: 285584
Number of successful extensions: 790
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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