Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15e01
         (659 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.64 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.0  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 415 FKTLHGLVDKGVKVDLGIPLELWDKPSAEIT-HMKTQCESLLEEN 546
           F T HG++DK  +VD+   L    +   + T  +  +C+S+  E+
Sbjct: 62  FMTKHGILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSIQNED 106


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 436  VDKGVKVDLGIPLELWDKPSAE 501
            +D   K+ LG+   LW +PS +
Sbjct: 1891 IDSLKKLKLGLRSSLWSRPSTQ 1912


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 436  VDKGVKVDLGIPLELWDKPSAE 501
            +D   K+ LG+   LW +PS +
Sbjct: 1887 IDSLKKLKLGLRSSLWSRPSTQ 1908


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = +1

Query: 481 WDKPSAEITHMKTQCESLLEENEIAVE 561
           W KP   +   KTQ   L E N +  E
Sbjct: 37  WRKPKPAMVEEKTQLRYLEELNALRTE 63


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,993
Number of Sequences: 438
Number of extensions: 3435
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)