Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15d20
(548 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro... 31 2.0
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein. 31 2.0
X95520-1|CAA64774.1| 1112|Homo sapiens cyclic nucleotide phospho... 31 2.7
U38178-1|AAC50724.1| 1112|Homo sapiens cyclic nucleotide phophod... 31 2.7
D50640-1|BAA09306.1| 1112|Homo sapiens phosphodiesterase 3B prot... 31 2.7
BC150307-1|AAI50308.1| 1112|Homo sapiens phosphodiesterase 3B, c... 31 2.7
BC048266-1|AAH48266.1| 566|Homo sapiens downstream neighbor of ... 31 2.7
AY459346-1|AAR24292.1| 1112|Homo sapiens cGMP-inhibited cAMP pho... 31 2.7
AK074964-1|BAC11320.1| 566|Homo sapiens protein ( Homo sapiens ... 31 2.7
AB209326-1|BAD92563.1| 298|Homo sapiens phosphodiesterase 3B, c... 31 2.7
X64228-1|CAA45535.1| 2090|Homo sapiens putative oncogene protein. 31 3.5
D14689-1|BAA03515.1| 2093|Homo sapiens KIAA0023 protein. 31 3.5
BC105998-1|AAI05999.1| 2080|Homo sapiens NUP214 protein protein. 31 3.5
BC045620-1|AAH45620.2| 2090|Homo sapiens nucleoporin 214kDa prot... 31 3.5
AL157938-9|CAI41111.1| 2090|Homo sapiens nucleoporin 214kDa prot... 31 3.5
AL157938-8|CAI41109.1| 1684|Homo sapiens nucleoporin 214kDa prot... 31 3.5
AK055561-1|BAB70956.1| 133|Homo sapiens protein ( Homo sapiens ... 31 3.5
AB159230-1|BAD07398.1| 2091|Homo sapiens KIAA0023 splice variant... 31 3.5
AK074875-1|BAC11259.1| 120|Homo sapiens protein ( Homo sapiens ... 30 4.6
>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like
protein rA9 protein.
Length = 1649
Score = 31.5 bits (68), Expect = 2.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 393 PHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCP 277
P P PA+G N P+ LS Q PARTA P
Sbjct: 561 PRALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAP 599
>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
Length = 1654
Score = 31.5 bits (68), Expect = 2.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -3
Query: 393 PHNTPEALPARGTRPNAPKHPRLSSQAERLIPARTALCP 277
P P PA+G N P+ LS Q PARTA P
Sbjct: 566 PRALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAP 604
>X95520-1|CAA64774.1| 1112|Homo sapiens cyclic nucleotide
phosphodiesterase protein.
Length = 1112
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 345 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 220
AP HPRLSS AE +P C+S+GE+ C++ +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317
>U38178-1|AAC50724.1| 1112|Homo sapiens cyclic nucleotide
phophodiesterase protein.
Length = 1112
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 345 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 220
AP HPRLSS AE +P C+S+GE+ C++ +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317
>D50640-1|BAA09306.1| 1112|Homo sapiens phosphodiesterase 3B
protein.
Length = 1112
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 345 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 220
AP HPRLSS AE +P C+S+GE+ C++ +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317
>BC150307-1|AAI50308.1| 1112|Homo sapiens phosphodiesterase 3B,
cGMP-inhibited protein.
Length = 1112
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 345 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 220
AP HPRLSS AE +P C+S+GE+ C++ +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317
>BC048266-1|AAH48266.1| 566|Homo sapiens downstream neighbor of SON
protein.
Length = 566
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 382 PRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLP 236
P +PG R PPE + SR A SP R L+ RR A LP
Sbjct: 6 PGYSPGFRKPPEVVRLRRKRARSRGAAASPPRELTEPAARRAALVAGLP 54
>AY459346-1|AAR24292.1| 1112|Homo sapiens cGMP-inhibited cAMP
phophodiesterase protein.
Length = 1112
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 345 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 220
AP HPRLSS AE +P C+S+GE+ C++ +P
Sbjct: 272 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 317
>AK074964-1|BAC11320.1| 566|Homo sapiens protein ( Homo sapiens
cDNA FLJ90483 fis, clone NT2RP3002983. ).
Length = 566
Score = 31.1 bits (67), Expect = 2.7
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -2
Query: 382 PRGAPGTRHPPERTKAPAS*LASRTADTSPHRSLSLYIDRRVASALSLP 236
P +PG R PPE + SR A SP R L+ RR A LP
Sbjct: 6 PGYSPGFRKPPEVVRLRRKRARSRGAAASPPRELTEPAARRAALVAGLP 54
>AB209326-1|BAD92563.1| 298|Homo sapiens phosphodiesterase 3B,
cGMP-inhibited variant protein.
Length = 298
Score = 31.1 bits (67), Expect = 2.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = -3
Query: 345 APKHPRLSSQAERLIPA--RTALCPCISIGESRLR--SRCRLIFQP 220
AP HPRLSS AE +P C+S+GE+ C++ +P
Sbjct: 210 APLHPRLSSAAEEKVPVIRPRRRSSCVSLGETAASYYGSCKIFRRP 255
>X64228-1|CAA45535.1| 2090|Homo sapiens putative oncogene protein.
Length = 2090
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 1267 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 1310
>D14689-1|BAA03515.1| 2093|Homo sapiens KIAA0023 protein.
Length = 2093
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 1246 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 1289
>BC105998-1|AAI05999.1| 2080|Homo sapiens NUP214 protein protein.
Length = 2080
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 1257 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 1300
>BC045620-1|AAH45620.2| 2090|Homo sapiens nucleoporin 214kDa protein.
Length = 2090
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 1267 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 1310
>AL157938-9|CAI41111.1| 2090|Homo sapiens nucleoporin 214kDa protein.
Length = 2090
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 1267 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 1310
>AL157938-8|CAI41109.1| 1684|Homo sapiens nucleoporin 214kDa
protein.
Length = 1684
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 861 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 904
>AK055561-1|BAB70956.1| 133|Homo sapiens protein ( Homo sapiens
cDNA FLJ30999 fis, clone HLUNG1000110, weakly similar to
PISTIL-SPECIFIC EXTENSIN-LIKE PROTEIN PRECURSOR. ).
Length = 133
Score = 30.7 bits (66), Expect = 3.5
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -3
Query: 414 PAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERLIPAR 292
PA + P +P +PARGT P+A H R A RL P R
Sbjct: 61 PAPPSAPPRASPSHIPARGT-PSARPHLR-PEHAPRLAPPR 99
>AB159230-1|BAD07398.1| 2091|Homo sapiens KIAA0023 splice variant 1
protein.
Length = 2091
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -3
Query: 435 AVHQASGPAAVATAPHNTPEALPARGTRPNAPKHPRLSSQAERL 304
A+ ++S P+ + +A + TP A +RP AP LS+ + +L
Sbjct: 1268 AIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSKL 1311
>AK074875-1|BAC11259.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ90394 fis, clone NT2RP2005632. ).
Length = 120
Score = 30.3 bits (65), Expect = 4.6
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -3
Query: 330 RLSSQAERLIPARTALCPCISIGESRLRSRCRLIFQPDSWPQTSSIRK 187
RLS + ++I ++T +C C++ G+ R RCR + + + + +R+
Sbjct: 27 RLSMISRQVICSQTRMCLCLAPGDDRRVHRCRDVRKGEQMKSRNGLRE 74
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,321,972
Number of Sequences: 237096
Number of extensions: 1621736
Number of successful extensions: 5737
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5727
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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