Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d20
         (548 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    28   0.054
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    23   2.0  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.2  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 0.054
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 71  WFITEHCVGIKLILYTNF*MMSVCMYLVCPWFFLVIYLAFLMLDV*GQL 217
           +F  +    +KL+L  NF    +C+ +V     +++Y+AF++L   G L
Sbjct: 381 FFYVQEDDDVKLVLL-NFGWQMICLIVVIALVSIIMYIAFIILQYAGLL 428


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 451 RPTRLSCPPS*RACGGRNRPA*HPRGAPGTRHPPERTKA 335
           RPTRL       A  G NRP   P+  P   HP  R +A
Sbjct: 27  RPTRLRREAKPEAEPGNNRPVYIPQ--PRPPHPRLRREA 63


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 16/39 (41%), Positives = 18/39 (46%)
 Frame = -2

Query: 451 RPTRLSCPPS*RACGGRNRPA*HPRGAPGTRHPPERTKA 335
           RPTRL       A  G NRP   P+  P   HP  R +A
Sbjct: 28  RPTRLRREAEPEAEPGNNRPVYIPQ--PRPPHPRLRREA 64


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 382 PRGAPGTRHPPERTKAPAS 326
           P GAP +++P +   +PAS
Sbjct: 51  PPGAPPSQNPSQMMISPAS 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,107
Number of Sequences: 438
Number of extensions: 2758
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)