Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d17
         (571 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    22   3.7  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    22   3.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   6.5  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   6.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.6  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = -1

Query: 106 ALCLQIKNLHYFKYIKVIYYV 44
           ++ +++ N+    Y+K++YY+
Sbjct: 281 SIIMELHNIEGTHYVKIVYYL 301


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 5/21 (23%), Positives = 15/21 (71%)
 Frame = -1

Query: 106 ALCLQIKNLHYFKYIKVIYYV 44
           ++ +++ N+    Y+K++YY+
Sbjct: 296 SIIMELHNIEGTHYVKIVYYL 316


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 155 VQSSIQIGLQCSECFLFAK*LQLYAIQLQHS 247
           + S I  GL   + F F K LQ+ A+ L HS
Sbjct: 637 IPSHIMAGLL--DKFFFPKWLQVLALWLNHS 665


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 192 NVSSSPSNCN-CTLYNSSIPINVSKYRSFNRLGS***RYSNINHAETSGKQSE 347
           N+  S +    C  Y  S     S+ RSF R  S   RY ++ H + +  +++
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYRND 248


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 195 VSSSPSNCNCTL 230
           +  +P NCNC++
Sbjct: 677 IGGNPFNCNCSM 688


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,500
Number of Sequences: 438
Number of extensions: 2695
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)