Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15d16
(548 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 28 0.79
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 27 1.4
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 27 2.4
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 27 2.4
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.2
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 4.2
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 7.3
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 25 9.7
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -1
Query: 149 CYLNLVSHKAKGCRYYYFI 93
C LNL S+K GCR +Y I
Sbjct: 382 CSLNLASNKITGCRTFYHI 400
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 152 SCYLNLVSHKAKGCRYYYFIRC*AK 78
SC LN+V HK K YY IR AK
Sbjct: 316 SCSLNIVFHKHKKVCTYYMIRHYAK 340
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 397 HGIEKRHRRG-GRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQR 263
+GI R R R EHGQ T+LK G I + V G Q+
Sbjct: 5 YGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQK 50
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 26.6 bits (56), Expect = 2.4
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = -2
Query: 397 HGIEKRHRRG-GRALGEHGQSGFKTFLKRLLCGRIFRLPVQGLRQR 263
+GI R R R EHGQ T+LK G I + V G Q+
Sbjct: 5 YGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQK 50
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.8 bits (54), Expect = 4.2
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Frame = +2
Query: 284 RKPEYSTAKEAFEKCLKSGLTVFAQ---GAAATPVPLLNAMTEVGKSGSLRDIKVVHMHT 454
++ EY K EKCL S + Q P + +E+ K +L +++
Sbjct: 1110 KEKEYKRLKGVIEKCLSSVASRINQIKCDWVTDPEKFESCTSEISKFRTLLSSDYTELYS 1169
Query: 455 EKDAAYVTPECKD 493
E D+ Y+ D
Sbjct: 1170 EFDSIYLNSSTSD 1182
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 27 SPVPNYIYWLLGVGARVLSLTTNKIVIT 110
SP+P + + G+ V +LTTN +T
Sbjct: 302 SPIPGFYHGFQGLATEVGTLTTNLFTLT 329
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 191 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 292
LH GKLS ++ D Y + S PL +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 374 PVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSL 514
P +L T V +GSL +++ +H H + +T K R++ L
Sbjct: 694 PERVLQQSTSVITNGSLDEVEDMHSHADYFKEMITGYAKRSLRTLGL 740
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 110 DIPLLCVKLNLNNRMSVITKIVPQVSSLHFGKLS 211
D+ +C L+LN M + + + + H GKLS
Sbjct: 318 DVHRMCQMLHLNASMEFLEETFQKADADHSGKLS 351
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 24.6 bits (51), Expect = 9.7
Identities = 13/65 (20%), Positives = 29/65 (44%)
Frame = +2
Query: 143 NNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFE 322
+ R+ + +I+ + + H G +S ++++ +S D EY EA+
Sbjct: 588 DERIRIPQRIIRHILNRHLGNNVGDRVSFRNEKFRVYVHSKISPNTDTYNEYVPVMEAYN 647
Query: 323 KCLKS 337
+ +KS
Sbjct: 648 EAVKS 652
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,212,836
Number of Sequences: 5004
Number of extensions: 42947
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -