Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d12
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi...   127   1e-30
SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.6  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   7.4  
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo...    25   9.7  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   9.7  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC27D7.06 |||electron transfer flavoprotein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 341

 Score =  127 bits (307), Expect = 1e-30
 Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 1/165 (0%)
 Frame = +3

Query: 171 STLVLAEHNNEVLSPATQNTLNAAKKIGGDVSVLVAGTKCGPAAESIAKA-NGISKVLVA 347
           S L L EH    LSPA+ + + AAK+ GGDV   V G      ++ +AK+ N + KV+  
Sbjct: 29  SVLTLLEHQGGNLSPASLSAVEAAKRTGGDVFGFVIGKDSSQISQKVAKSVNDLKKVIYV 88

Query: 348 ESDVFKGFTAETLTPLILATQKQFKFTHILAPATAFGKTVLPRVAAKLDVSPITDIIGIK 527
           E+  ++    + +  ++    K+ + +H+ +  +  GK V+PR+AA  DV  I+DIIG+ 
Sbjct: 89  ENPSYEHNIPDQIANVLFENVKKNEISHVFSAHSTVGKGVMPRLAAMFDVMQISDIIGVV 148

Query: 528 DANTFVRTIYAGNAILTLEAKDPIKVITVRGTAFPAEPLEGGSAA 662
            A+TFVR  YAGN  +T+  KDPIK++TVR +AF A P  G  AA
Sbjct: 149 SADTFVRPTYAGNVNVTVSTKDPIKIVTVRASAFDAAPSSGEGAA 193


>SPAC1687.23c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 104

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -1

Query: 309 WILQQVHIWFQPQALRHHLQFSWQHSMYFGLLEIVPHCC 193
           WIL++ +I+F+   ++   +F + +++   LL    +CC
Sbjct: 2   WILEKKNIFFKIIHIKSSRKFDFSNAIRIVLLPFSSNCC 40


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 268 TETSPPIFLAAFNVFWVAGDSTSLLCSASTKV 173
           T T P +FLA   +F   G+    LCS    V
Sbjct: 395 TPTYPELFLAKAKIFLCMGEIEEALCSFKRSV 426


>SPBC582.07c |rpn7||19S proteasome regulatory subunit
           Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 5   KNLLSFLNIGLCNLDLSLINYLINKNRFPEQNLAYQNVCTQ 127
           ++L SF+     N  +  +N ++  NR  E+N  YQ V  Q
Sbjct: 347 RDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQ 387


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 241 PRKLEVMSQCLWLEPNVDLLQNPLLRQMVYLK 336
           P+K E   +C  L   +D+LQN + +  + LK
Sbjct: 435 PKKAEATKRCDQLNREIDILQNHVEKLKMSLK 466


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 309 WILQQVHIWFQPQALRHHLQF 247
           W+L  + IWF    +RH   F
Sbjct: 194 WLLSNIAIWFPVHQIRHLFTF 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,616
Number of Sequences: 5004
Number of extensions: 55084
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)