Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d09
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   1.9  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    27   2.5  
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    26   4.3  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    26   4.3  
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi...    26   4.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   5.7  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   7.5  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    25   7.5  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   10.0 
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    25   10.0 
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   10.0 

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +3

Query: 30   GFSCLTAIMNSLNKLSVYSKLVPK--NARVISTS 125
            G S LT + N+ N+ S+Y KLV +   A V+STS
Sbjct: 1849 GRSFLTILSNTKNRDSLYQKLVARAPGADVLSTS 1882


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -2

Query: 351 ILQAHNQVLLCVNVLDLHAACN 286
           +L +H +++ CVN ++LH  C+
Sbjct: 149 LLDSHPKIIPCVNQIELHPFCS 170


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 158 EITSSKNRTDKRVTQSNA**QGSNLCSSYTQHKTGFSGQLFKK 286
           E  +++N+ D    QSN     S   + YT +   FS QLFK+
Sbjct: 399 ETNTTENQKDNARGQSNKGHGFSTSLNPYTLYFKSFSSQLFKE 441


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -1

Query: 271 STESGLMLCV*RA*ITSLSLSIRLC-DSFVGSILRTSNFE 155
           + ES L  CV +  ++S++ S+RLC   F  S++R+S ++
Sbjct: 496 NVESVLNACVEKYTLSSITCSLRLCLLEFPDSLIRSSFYD 535


>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 178 ILRTSNFENHPSSVFNSALVDI 113
           +LRT   +N P S F +A  DI
Sbjct: 180 VLRTGPIQNRPDSTFTAATTDI 201


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 325  QNLVVSL*DHGQYQLEIWIKLCIYSNMLVDLKKLTRPNNCLNK 453
            QNL   L      Q+   ++  + S ++V++KKL +  +C  K
Sbjct: 1241 QNLCDFLYTRDDVQMNADVQFSVTSGLIVEIKKLAQSTDCKAK 1283


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 315 NVLDLHAACNFLNSCPLNPVLCCVYEE 235
           N+L L    +  N CPLN  +CC   E
Sbjct: 475 NLLQLKFTDDVRNVCPLNLNVCCCIAE 501


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
 Frame = +3

Query: 36  SCLTAIMNSLNKLSVYSKLVPKNARVISTSALLNTDDGWFSKLLVRRIEPTKESHSRMLS 215
           SCL AI +S ++     K  P +  + ST  +L  DD      +V +         +   
Sbjct: 316 SCLDAI-DSRSQSKKLGKETPHDYLITSTKTVLEFDD------IVTQTHRAISQVVKQAK 368

Query: 216 DKEVIYALHTHN-IRPDSVDNYLK--NYKQHVDLIHSHKAELGCELVGSW 356
           D  V   + T++ I  +    +LK  N    +DLI S   + G  + GSW
Sbjct: 369 DNSVWIKILTYSAIDVEEFQLWLKRKNLNVSLDLIKSWCDKYGVLMKGSW 418


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 306 LIHSHKAELGCELVGSWTVSVGDMDQALHLFKYVGGFEKI 425
           L HSH+A    +++G + VS  +   A+H  +   G+E +
Sbjct: 223 LQHSHQAGTKLKVLGKYHVSSIEKQVAIHFQQSKEGYEVV 262


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 411 GFEKIDKAKQLFKQDSSYQLLESE 482
           G E  D  +QL KQD  YQ L+ +
Sbjct: 324 GKELKDNKEQLVKQDQKYQSLQGD 347


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 183 PTKESHSRMLSDKEVIYALHTHNIRPDSVDNYLK 284
           P + SH+   S K  ++ ++ H  RP+  D  L+
Sbjct: 173 PFELSHASTASAKSPLFGMNYHISRPEETDESLR 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,318,658
Number of Sequences: 5004
Number of extensions: 47668
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)