Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d09
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0460 + 3561490-3564104,3564162-3564558                           27   7.7  
01_06_0692 + 31276342-31276479,31277161-31277408,31277541-312777...    27   7.7  

>11_01_0460 + 3561490-3564104,3564162-3564558
          Length = 1003

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 517 YWRCLDLTILPLSLSSNW*LESCLNNCLALSIFS 416
           YW  L+   L      +W   SCL NC  L+ FS
Sbjct: 295 YWLNLEKNQLHARNKQDWEFMSCLANCTGLTDFS 328


>01_06_0692 +
           31276342-31276479,31277161-31277408,31277541-31277722,
           31278007-31278143,31278381-31278546,31278615-31278731,
           31279038-31279198,31279431-31279634
          Length = 450

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/82 (24%), Positives = 38/82 (46%)
 Frame = -2

Query: 375 YLQLILSMILQAHNQVLLCVNVLDLHAACNFLNSCPLNPVLCCVYEEHKLLPCH*AFDCV 196
           +++ IL+ ++Q   Q+ + +  +    A NF+ SC    V   V  +H LL  +  F   
Sbjct: 254 FIEKILAPLVQRLPQLKIVMEHITTMDAVNFVESCKEGHVAATVTPQHLLLNRNALFQ-G 312

Query: 195 TLLSVRFFELVISKTIHRQCLI 130
            L    +   V+ +  HRQ ++
Sbjct: 313 GLQPHNYCLPVLKRETHRQAIV 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,076,365
Number of Sequences: 37544
Number of extensions: 276104
Number of successful extensions: 636
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)