Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d06
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    31   0.17 
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    28   0.89 
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    27   1.5  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    27   2.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   3.6  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    25   8.3  

>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 30.7 bits (66), Expect = 0.17
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 448 SQPKCQEYFCIYFLPNLFFYTMECLLLSSIC-LRVHLLRL 332
           SQP  Q +  ++FL +L +Y  EC++  S C LR  L  L
Sbjct: 445 SQPWTQLWVTLWFLSSLQYYAYECVIKPSYCKLRESLTEL 484



 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 340 LRLKTRIYLNTSKMHIELQRICSYTYKKKDFRI*KGL-HPWQRL 212
           L + + +++    +H+ + +I S  Y++K++   KG+  PW +L
Sbjct: 409 LNVYSDLWILLGSLHLSITKIKSLFYERKEYTA-KGISQPWTQL 451


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 523 LCGELNISRNEGCTSISLLRILPQ*SQPKCQEYFC 419
           + G+LN  ++  C ++    ILP+  QP C E FC
Sbjct: 159 ITGDLNAGKSTLCNALVHKDILPEDQQP-CTEVFC 192


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 354 RQIEDNRRHSMV*KNKFGRK*IQKYSWHFGCDYWGRILN 470
           RQ+    R+++   +K  RK +Q +S+    D+W R+L+
Sbjct: 407 RQLAITLRNTIHQPSKDSRKPVQSWSYVHSLDFWARLLS 445


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
 Frame = +1

Query: 187 ARTIHDVNTNVA-KDVI-LFKYENPSFYKYMNIFAVVQYA-FWMYLGIFAFSTLKDAPVD 357
           A+ +H  N ++   DV+ L   ENP   + ++I+ ++QYA F   L + + +T++    D
Sbjct: 59  AQMMHGENMSLYFPDVVKLVASENPEIRRLVHIY-LLQYAEFNPDLALLSVNTVQKTLYD 117

Query: 358 KSKITEDT 381
           K+ +T  T
Sbjct: 118 KNPLTRST 125


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
 Frame = -2

Query: 403 NLFFYTMECLLLSSICLRVHLLRLKTRIYL---NTSKMHIELQRICSYTYKKKD 251
           N+FF + +C+  SS  +   L+RL +   L      K H +  +I +Y    +D
Sbjct: 321 NIFFNSFDCIFFSSTKVPCQLIRLPSDFVLCKMKGKKEHKDAFKIANYLGSPED 374


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
 Frame = -1

Query: 521 LWRTKYLTERRVYIHI--IVKDPAPIITAKVPRVF-----LYLFSPKFIFLYHGVSSVIF 363
           LW++KY T   ++ H+  +++    ++       +     LY+    ++F   GV   I 
Sbjct: 358 LWKSKYNTSNPMFRHLSSMIRTRQNLVETYPEFTYVLSFQLYIDDSVYVFTRPGVIIAIS 417

Query: 362 DLSTGASFKVE 330
           +  + +SFKVE
Sbjct: 418 NEGSTSSFKVE 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,967
Number of Sequences: 5004
Number of extensions: 51692
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)