Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d06
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   3.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   9.0  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 297 CILDVFRYIRVFNLKRCTRRQIEDNRRHSM 386
           CI+ VF Y  +F   R   R+   NR+ ++
Sbjct: 356 CIIMVFLYYNIFKALRNRARKARANRKPNL 385


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +1

Query: 310 YLGIFAFSTLKDAPVDKSKITEDTPWYRKINLGENKYKNTLGT 438
           +LG   F  ++ +PV ++ + +  PW+ +      K+    GT
Sbjct: 51  FLGPVGFGGVQVSPVQENIVIDKRPWWERYQPISYKWITRSGT 93


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 436 TLAVII---GAGSLTMIWMYTLRSVRYLVLHKG 525
           ++AVII   G   +  I   +++ +RY ++H G
Sbjct: 13  SVAVIIRANGINEILKIMAVSMKDIRYCIIHMG 45


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 240 KKDYILGNVCVDIMNSSC 187
           K+D +  N+ VDI N  C
Sbjct: 303 KEDSLYTNIVVDIRNEDC 320


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 395  FLYHGVSSVIFDLS 354
            F+YHG SS   D+S
Sbjct: 1817 FIYHGTSSTSSDIS 1830


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 395  FLYHGVSSVIFDLS 354
            F+YHG SS   D+S
Sbjct: 1813 FIYHGTSSTSSDIS 1826


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 504 SHGTKGVHPYHC 469
           SHG +G  PY C
Sbjct: 83  SHGKEGEDPYRC 94


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/36 (22%), Positives = 17/36 (47%)
 Frame = +1

Query: 190 RTIHDVNTNVAKDVILFKYENPSFYKYMNIFAVVQY 297
           +TIH+ N     +   + Y N ++  Y  ++  + Y
Sbjct: 88  KTIHNNNNYNNNNYNNYNYNNNNYNNYKKLYYNINY 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,618
Number of Sequences: 438
Number of extensions: 3591
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)