Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15d04
(596 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 30 0.22
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 28 0.90
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.6
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 3.6
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 4.8
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 4.8
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 4.8
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 8.4
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.4
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 25 8.4
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/51 (43%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = -1
Query: 572 FSLASIISKTSLLSSVVLPV-----TGDPFT-DSNTCPTFIPSLWPNATTT 438
F +S+IS SL SS VLP T P T S++ +F PS N TTT
Sbjct: 228 FLPSSVISSASLSSSSVLPTSIITSTSTPVTVSSSSLSSFTPSYSTNLTTT 278
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 28.3 bits (60), Expect = 0.90
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 527 VVLPVTGDPFTDSNTCPTFIPSLWPNATTTFL 432
V+L DP +D+ + PTF+PS P+ TT +L
Sbjct: 13 VMLNQQQDP-SDAQSSPTFVPSANPSLTTPWL 43
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 469 INVGHVLLSVNGSPVTGRTTEDNRDVFDII 558
+NVG +LSV +PV + E+++DV D I
Sbjct: 560 LNVGPNMLSVGEAPVESTSKEEDKDVPDPI 589
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 170 RNINSRTYLNFLSYIYSLF-LIDMRSKYEYY 81
+N+ S + NFL Y+ SLF +I+ Y Y
Sbjct: 89 KNVTSNIFKNFLHYLKSLFPIIEWLPNYNPY 119
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 4.8
Identities = 16/65 (24%), Positives = 31/65 (47%)
Frame = -1
Query: 278 VFSTHMH*MLNVIVKSTKLVHKLILVISRKLLENITRNINSRTYLNFLSYIYSLFLIDMR 99
+F+ M +LN I KST + L + + + + R + R NF + + S+ L++
Sbjct: 547 IFALKMEHLLNEIQKSTLSLKSLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGA 606
Query: 98 SKYEY 84
+ Y
Sbjct: 607 GRQLY 611
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 4.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 469 INVGHVLLSVNGSPVTGRTTEDNRDVFDIIEAKENYPLSLK 591
+ +GH +++NG+ VT R DV II + N +S K
Sbjct: 291 LEIGHDWVNLNGNKVTVRAITVGIDVPRIIRSSGNVSVSEK 331
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3
Query: 312 VYNHFIIFFNCSVFYTYALNVKCNCEIYETRSQTNFSNFT 193
++ F+ + S+ YT LNV C ++ T +FT
Sbjct: 689 MFTSFVQYIFLSIMYTNVLNVYAFCNTHDVSWGTKGDHFT 728
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +1
Query: 307 IYGIYIVSKSGGLIYNYDHNIPRVETEKTFGFPLDIKLQY 426
I G ++V + G ++NY+ N + T+ LD+ L +
Sbjct: 2295 IQGFFLVPEEG--VWNYNFNGASFSPKMTYSLKLDVPLPF 2332
>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/33 (24%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 251 LNVIVKSTKLV--HKLILVISRKLLENITRNIN 159
++V++K +V H+++ + + +EN+ + IN
Sbjct: 81 IDVVIKEAYVVRAHRILSIFQEQFIENVVKEIN 113
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 8.4
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 286 KEDNKMVIYGIYIVSKSGGLIYNYDHNIPRVETEKTFGFPLDIKL 420
KE KM G+YI++ + G I N D I +++ K LD+ L
Sbjct: 235 KEFEKMKD-GVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFL 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,606
Number of Sequences: 5004
Number of extensions: 48467
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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