Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d04
         (596 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.3  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    23   3.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.2  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 379 ETEKTFGFPLDIKLQYENKK 438
           E E  FG PL+  L+Y +K+
Sbjct: 499 EVEYVFGHPLNKSLKYSDKE 518


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 279 SVFYTYALNVKCNCE 235
           S F T  +++KCNC+
Sbjct: 19  SYFVTPTMSIKCNCK 33


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 10  LGGLCFVLHFFTICG 54
           LG + FV+ FF  CG
Sbjct: 58  LGSIIFVISFFGCCG 72


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -1

Query: 467 PSLWPNATTTFLFSYC----NLISRGNPNVFS 384
           P +W +A T   FSY      L++ G+ N F+
Sbjct: 277 PEVWIDAVTQIFFSYALGLGALVALGSYNKFN 308


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
 Frame = -1

Query: 467 PSLWPNATTTFLFSYC----NLISRGNPNVFS 384
           P +W +A T   FSY      L++ G+ N F+
Sbjct: 330 PEVWIDAVTQIFFSYALGLGALVALGSYNKFN 361


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 95  KYEYYRKSYFLIEVPQIVKKCKTKHKPP 12
           +YE Y K     E   ++++ KTK K P
Sbjct: 63  EYELYIKYSHTHEKKLVLERSKTKSKSP 90


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 385 EKTFGFPLD 411
           +K FGFPLD
Sbjct: 647 DKVFGFPLD 655


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 385 EKTFGFPLD 411
           +K FGFPLD
Sbjct: 647 DKVFGFPLD 655


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,344
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)