Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d02
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.2  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 582 WYKSRRSARSLCQRW 626
           W+ S RSAR + Q W
Sbjct: 573 WHPSDRSARLMLQPW 587


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 513 DCCYPCRSSRVCRHVCAAGDSRN 581
           D C  CR+  +C  V +AG+S++
Sbjct: 56  DAC--CRTHDMCPDVMSAGESKH 76


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 513 DCCYPCRSSRVCRHVCAAGDSRN 581
           D C  CR+  +C  V +AG+S++
Sbjct: 61  DAC--CRTHDMCPDVMSAGESKH 81


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 372 TVHGNGTYSVLSQVLRHLQDQAGRSILHLKG 280
           T HG    +VL++   H  D  G  ++H+ G
Sbjct: 179 TPHGWMRRNVLNKQHVHFHDYTGSVVIHVVG 209


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 11/46 (23%), Positives = 20/46 (43%)
 Frame = +1

Query: 55  KNIIEMFPTVCRVGRLATKTVVNNATEKASLVTGAAVNKRDYAAKA 192
           +N++     VC++        + +ATE A    G  +  R  A +A
Sbjct: 764 RNVLVNAALVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPEA 809



 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 298 RSPRLVLEVAQHLGENTVRTIAMDGTE 378
           RSP  + ++AQ+ G N +   A+D T+
Sbjct: 897 RSPDTLRKIAQNRGTNPLAPDAVDLTQ 923


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 363 GNGTYSVLSQVLRHLQDQAGRSILHLKGI 277
           G+ TY+     L+H++ +AG +++  KGI
Sbjct: 177 GSWTYNGAQVDLKHMKQEAGSNLV-AKGI 204


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 513 DCCYPCRSSRVCRHVCAAGDSRN 581
           D C  CR+  +C  V +AG+S++
Sbjct: 61  DAC--CRTHDMCPDVMSAGESKH 81


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 367 DGTEGLVRGQPVLDSGSPI 423
           DGTEG+ +   VL    PI
Sbjct: 193 DGTEGIAKSGDVLVETEPI 211


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 588 KSRRSARSLCQRWKDWVVWRSWCGQNCIDYGN*STMLPKPM 710
           +S+RS+ S   R  +      +CG+    +G+ +  LP+P+
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +3

Query: 588 KSRRSARSLCQRWKDWVVWRSWCGQNCIDYGN*STMLPKPM 710
           +S+RS+ S   R  +      +CG+    +G+ +  LP+P+
Sbjct: 25  QSQRSSGSSISRNSNRSESSGYCGRRPSTFGSSNEALPQPI 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,118
Number of Sequences: 438
Number of extensions: 4698
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)