Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15d01
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.      31   1.1  
AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp ge...    31   1.1  
U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical p...    30   1.5  
AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z92803-1|CAB07242.2|  384|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AF304126-1|AAG50239.1|  384|Caenorhabditis elegans RING and zinc...    29   4.6  
Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical p...    28   8.1  
U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical p...    28   8.1  

>AF134186-1|AAD55361.1| 1359|Caenorhabditis elegans XNP-1 protein.
          Length = 1359

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +3

Query: 180 AKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXIDEDVK 359
           AKK K + + E+ D + E+   S+ K  ++ K   +SD                +D+  K
Sbjct: 56  AKKRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKK 115

Query: 360 EVTKNLKNVSVTNKSQKKKADVTSEDE-SDSELE 458
           E            KS+KK+   +SEDE SD E E
Sbjct: 116 E------------KSKKKRTTSSSEDEDSDEERE 137


>AF000196-11|AAC24256.1| 1359|Caenorhabditis elegans Human xnp gene
           related protein 1 protein.
          Length = 1359

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +3

Query: 180 AKKGKKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXIDEDVK 359
           AKK K + + E+ D + E+   S+ K  ++ K   +SD                +D+  K
Sbjct: 56  AKKRKASSSEEDDDDEEESPRKSSKKSRKRAKSESESDESDEEEDRKKSKSKKKVDQKKK 115

Query: 360 EVTKNLKNVSVTNKSQKKKADVTSEDE-SDSELE 458
           E            KS+KK+   +SEDE SD E E
Sbjct: 116 E------------KSKKKRTTSSSEDEDSDEERE 137


>U53154-11|AAC25848.1|  390|Caenorhabditis elegans Hypothetical
           protein C33G8.2 protein.
          Length = 390

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
 Frame = +3

Query: 192 KKNQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXIDEDVKEVTK 371
           KK++  ++ D D E       K  +  KK  D D                 DED  +  K
Sbjct: 295 KKDKKKKKDDKDDEDEEKEKDKKKKDKKKDDDDDDDEKEKKDKKKKDDKDDDEDEDKDDK 354

Query: 372 NLKNVSVTN---KSQKKKADVTSEDESDSE 452
             K   V +   K +KKK D   EDE D +
Sbjct: 355 KKKKDDVDDDMKKDKKKKEDDDKEDEDDKK 384


>AF003130-3|AAB54123.1|  849|Caenorhabditis elegans Hypothetical
           protein F55A12.5 protein.
          Length = 849

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +3

Query: 378 KNVSVTNKSQKKKADVTSEDESDSELE 458
           +NV+++  S+K+  D + EDE D E+E
Sbjct: 572 QNVAISTPSKKESFDSSDEDEEDDEME 598


>Z92803-1|CAB07242.2|  384|Caenorhabditis elegans Hypothetical
           protein K01G5.1 protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 348 EDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSELEVXXXXXXXXXXXXSVFSLLEIEN 527
           E++    K L       K Q+K+     E+E DS+ +                   E EN
Sbjct: 283 ENIMNTAKELLTYLKRKKQQQKQEAEKQEEEKDSDDDEKPHECDDHHHHDHEDEPEEPEN 342

Query: 528 DVSPPEAPMSSEDEKPV 578
           D + PEA   S++E+ +
Sbjct: 343 DSNVPEAEEKSDEEQEI 359


>AF304126-1|AAG50239.1|  384|Caenorhabditis elegans RING and zinc
           finger protein protein.
          Length = 384

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/77 (24%), Positives = 31/77 (40%)
 Frame = +3

Query: 348 EDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSELEVXXXXXXXXXXXXSVFSLLEIEN 527
           E++    K L       K Q+K+     E+E DS+ +                   E EN
Sbjct: 283 ENIMNTAKELLTYLKRKKQQQKQEAEKQEEEKDSDDDEKPHECDDHHHHDHEDEPEEPEN 342

Query: 528 DVSPPEAPMSSEDEKPV 578
           D + PEA   S++E+ +
Sbjct: 343 DSNVPEAEEKSDEEQEI 359


>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 744 GRFWSRSRFLFNT-SIFPFLIQQGLFQY 664
           GRFWS S  +FNT ++F F+    +F +
Sbjct: 165 GRFWSMSNVIFNTITLFLFVFLMIVFHF 192


>Z81508-9|CAB04140.2|  310|Caenorhabditis elegans Hypothetical
           protein F20E11.2 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 744 GRFWSRSRFLFNT-SIFPFLIQQGLFQY 664
           GRFWS S  +FNT ++F F+    +F +
Sbjct: 165 GRFWSMSNVIFNTITLFLFVFLMIVFHF 192


>U28739-11|AAR25657.1|  487|Caenorhabditis elegans Hypothetical
           protein C17G10.6b protein.
          Length = 487

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
 Frame = +3

Query: 177 KAKKGKK----NQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXI 344
           K KKGKK    +   E+ D D +  ++     + K+ K +D +                 
Sbjct: 298 KGKKGKKKNKDDDEDEDEDDDEDNGDLERVDGIVKIPKAIDGNTDDHEEDYEDEDEE--- 354

Query: 345 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSE 452
           +ED  E  +N +      K+ +KK +   E++ + E
Sbjct: 355 EEDDNEDDENSRKKKKGRKNGRKKNNEDEEEDDNDE 390


>U28739-10|AAR25656.1|  683|Caenorhabditis elegans Hypothetical
           protein C17G10.6a protein.
          Length = 683

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
 Frame = +3

Query: 177 KAKKGKK----NQTTEEGDSDIETTNISNAKPVQKVKKIVDSDXXXXXXXXXXXXXXXXI 344
           K KKGKK    +   E+ D D +  ++     + K+ K +D +                 
Sbjct: 349 KGKKGKKKNKDDDEDEDEDDDEDNGDLERVDGIVKIPKAIDGNTDDHEEDYEDEDEE--- 405

Query: 345 DEDVKEVTKNLKNVSVTNKSQKKKADVTSEDESDSE 452
           +ED  E  +N +      K+ +KK +   E++ + E
Sbjct: 406 EEDDNEDDENSRKKKKGRKNGRKKNNEDEEEDDNDE 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,827,764
Number of Sequences: 27780
Number of extensions: 191636
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)