Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c24
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   1.8  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    23   4.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    23   5.5  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    23   7.3  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    23   7.3  
SPBC19C2.03 |rpc10|rpb12|DNA-directed RNA polymerase I, II and I...    22   9.6  

>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 185 VSNLYIKL*QH-VLQSSFVLKLYCYVKI*SQ*CVLCIYNSRKL*SFFLWLSYKYL 24
           V  L +KL +  +LQ    LKLY  +K+ +   V    +  +L   FL+ S+K L
Sbjct: 188 VETLVVKLTEKLILQLQKPLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYFSWKQL 242


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -2

Query: 97  SSVYYVFITLVNCEAFFC 44
           ++ +++F+TL+ C   FC
Sbjct: 156 ANAFFLFVTLLQCIPLFC 173


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 35  NLTTKKSFTIYESYKYIIHTTVIIF*HNNIIS 130
           N+   K F +  S +Y+++ T +   +NN ++
Sbjct: 508 NIANNKLFFLPHSTRYLVNLTYLDLSYNNFVT 539


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 26  NIYNLTTKKSFTIYESYKYIIHTTVIIF 109
           N YN   +    +    KY+I T V+IF
Sbjct: 93  NFYNYFDQALADLNSVVKYVIETIVLIF 120


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 26  NIYNLTTKKSFTIYESYKYIIHTTVIIF 109
           N YN   +    +    KY+I T V+IF
Sbjct: 93  NFYNYFDQALADLNSVVKYVIETIVLIF 120


>SPBC19C2.03 |rpc10|rpb12|DNA-directed RNA polymerase I, II and III
           subunit Rpc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 63

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 145 CNTCCHNLMYKLDT 186
           C  C H +MYK+ T
Sbjct: 41  CRECGHRVMYKMRT 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 731,382
Number of Sequences: 5004
Number of extensions: 10768
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)