Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c19
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                        126   1e-29
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   2.4  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       28   5.6  
SB_53844| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.4  
SB_35950| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.4  
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)                  27   9.8  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/91 (67%), Positives = 72/91 (79%)
 Frame = +1

Query: 130 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 309
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64

Query: 310 IVLSDDNCPDEKIRMXXXXXXXXXXXXSDVV 402
           IVLSDD   D+KIRM             DVV
Sbjct: 65  IVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +1

Query: 550 DTFMVRGGMRAVEFKVVETDPSPFCIVAPD 639
           D F+VRGGMRAVEFKV+ETDPSP+CIVAPD
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPD 133


>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1266

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +2

Query: 146 RSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKP 304
           RSSV R   T ++  K S +T ++W     +WSN++    + S SR ++ R P
Sbjct: 364 RSSV-REQATATVMSKGSYITIRNW----TRWSNYSGGGYSISNSRPSSRRNP 411


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 184 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 330
           +EE + D   +V+ S      LQL R  T +LK    K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 509 SRTSWRLTVRSIVTTPSWSAGACAPSSSKWSKQIHHHF 622
           +R S  + +  I ++ S SA A + SSS  S   HHH+
Sbjct: 174 ARNSTVIIIIIITSSSSSSAAAASSSSSSSSSSSHHHY 211


>SB_53844| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 415

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 630 HDAKW*WICFDHFELDGAHAPADHEGV 550
           H   W  IC+DH++L  AH      G+
Sbjct: 255 HAGAWGLICYDHWDLHDAHVACRQVGL 281


>SB_35950| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 501

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 630 HDAKW*WICFDHFELDGAHAPADHEGV 550
           H   W  IC+DH++L  AH      G+
Sbjct: 318 HAGAWGLICYDHWDLHDAHVACRQVGL 344


>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
          Length = 328

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 391 SDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPI 540
           S+  +I P P+   GK  H+      V GL     +  ++ YF +AY P+
Sbjct: 81  SEADAIDPKPAAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPV 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,858,899
Number of Sequences: 59808
Number of extensions: 424259
Number of successful extensions: 1225
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)