Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c08
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     26   3.9  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    26   5.2  
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   5.2  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   6.8  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   6.8  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   9.0  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   9.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.0  

>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -1

Query: 512 VVEPGLELVPFQLPLDQPY 456
           + E  +ELVPFQL LD  Y
Sbjct: 101 IKENNIELVPFQLTLDYDY 119


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 11  ILSGHLTGLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGR-VPACTHDL 172
           ILSG ++ L K+   E AAS+ S+ V+      E +E  A L +   VP+ ++ L
Sbjct: 92  ILSGRISELLKVSPFELAASVTSQDVVEADSLVEENELQAWLEKQELVPSSSNFL 146


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 368 GMQPTHNIADTHALVTAVGTGKGLRPGMANM 460
           G  P HNI   H L  +V  G    P + N+
Sbjct: 140 GQDPYHNIGQAHGLCFSVRPGIPCPPSLVNI 170


>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 127

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 361 SH*LSFPVFAAFGYNFPNVTDNFSELSNVFLCCIIA 254
           SH L       F Y  P +  NF+ L   F+ C+IA
Sbjct: 25  SHKLWVSSLNKFQYTLPLLISNFAGLGIAFIYCLIA 60


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +2

Query: 98  QLSCERDET--LAH-LTEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTL 253
           Q SC R  T  L H +    +    H L  D+L  +  P  E ++ +F HKA  L
Sbjct: 257 QRSCYRTYTTELTHEIVRKNLAFAPHMLAGDILSPRYCPSLEAKVTRFPHKARHL 311


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 518 PAPSTLPKAPSAIKTNIKAANQIHP 592
           P PST P  P  I T+ K    ++P
Sbjct: 11  PVPSTKPSQPCKIGTDFKGERIVYP 35


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 319 NFPNVTDNFSELSNVFLC 266
           N+    DNFSE+ N F C
Sbjct: 549 NYQKFGDNFSEIGNPFCC 566


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 429 EKGYDQVWRIWLVKGQLEWDQLEARLHNSV 518
           +KG+   W + LVKG++  D  E ++  S+
Sbjct: 370 DKGHPS-WHVTLVKGKISTDMEECKVSKSI 398


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -2

Query: 343 PVFAAFGYNFPNVTDNFSELSNVFLCC 263
           P F A  Y   N    F+E S+ FLCC
Sbjct: 27  PSFRASMYYLGNQIKAFNEWSHDFLCC 53


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,375,076
Number of Sequences: 5004
Number of extensions: 42788
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)