Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c08
         (629 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF521562-1|AAM76709.1|  268|Homo sapiens mediator of RNA polymer...   134   3e-31
BC010543-1|AAH10543.1|  212|Homo sapiens MED8 protein protein.         97   5e-20
BC010019-1|AAH10019.3|  179|Homo sapiens mediator of RNA polymer...    97   5e-20
AL139289-6|CAI23382.1|  179|Homo sapiens mediator of RNA polymer...    97   5e-20
AL139289-5|CAI23381.1|  212|Homo sapiens mediator of RNA polymer...    97   5e-20
D14811-1|BAA03552.1|  274|Homo sapiens KIAA0110 protein.               30   5.9  
CR456893-1|CAG33174.1|  274|Homo sapiens MAD2L1BP protein.             30   5.9  
BC002904-1|AAH02904.1|  274|Homo sapiens MAD2L1 binding protein ...    30   5.9  
AL136131-1|CAC19507.1|  274|Homo sapiens RP1-261G23.6 protein.         30   5.9  

>AF521562-1|AAM76709.1|  268|Homo sapiens mediator of RNA polymerase
           II transcription subunit MED8 protein.
          Length = 268

 Score =  134 bits (323), Expect = 3e-31
 Identities = 88/224 (39%), Positives = 121/224 (54%), Gaps = 24/224 (10%)
 Frame = +2

Query: 2   NYAILSGHLTGLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLVPD 181
           ++A+LSG L  L+K+L+ E+    R+++++PL LS +RDE L   TEGRVP  +H++VPD
Sbjct: 48  SFALLSGQLNTLNKVLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPD 107

Query: 182 LLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISKGREDWEGESMR 361
            LRTKP+P+ E++ +Q    A+ +  D AQK I    K+ S++ E ISK  E+ E ES  
Sbjct: 108 HLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLEKISK--EERESESGG 165

Query: 362 STGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQXXXXXXXXXXXXXQL 514
               + T N  DT+ALV AV  GKGL          PG A   G              Q+
Sbjct: 166 LRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGAGTILAGTSGLQQVQM 225

Query: 515 GPAPSTLP---------------KAPSAIKTNIKAANQIHPYQR 601
             APS                  K PS IKTNIK+A+ +HPYQR
Sbjct: 226 AGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHPYQR 268


>BC010543-1|AAH10543.1|  212|Homo sapiens MED8 protein protein.
          Length = 212

 Score = 97.1 bits (231), Expect = 5e-20
 Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
 Frame = +2

Query: 137 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 316
           TEGRVP  +H++VPD LRTKP+P+ E++ +Q    A+ +  D AQK I    K+ S++ E
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63

Query: 317 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 469
            ISK  E+ E ES      + T N  DT+ALV AV  GKGL          PG A   G 
Sbjct: 64  KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121

Query: 470 XXXXXXXXXXXXXQLGPAPSTLP---------------KAPSAIKTNIKAANQIHPYQR 601
                        Q+  APS                  K PS IKTNIK+A+ +HPYQR
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHPYQR 179


>BC010019-1|AAH10019.3|  179|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 179

 Score = 97.1 bits (231), Expect = 5e-20
 Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
 Frame = +2

Query: 137 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 316
           TEGRVP  +H++VPD LRTKP+P+ E++ +Q    A+ +  D AQK I    K+ S++ E
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63

Query: 317 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 469
            ISK  E+ E ES      + T N  DT+ALV AV  GKGL          PG A   G 
Sbjct: 64  KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121

Query: 470 XXXXXXXXXXXXXQLGPAPSTLP---------------KAPSAIKTNIKAANQIHPYQR 601
                        Q+  APS                  K PS IKTNIK+A+ +HPYQR
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHPYQR 179


>AL139289-6|CAI23382.1|  179|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 179

 Score = 97.1 bits (231), Expect = 5e-20
 Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
 Frame = +2

Query: 137 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 316
           TEGRVP  +H++VPD LRTKP+P+ E++ +Q    A+ +  D AQK I    K+ S++ E
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63

Query: 317 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 469
            ISK  E+ E ES      + T N  DT+ALV AV  GKGL          PG A   G 
Sbjct: 64  KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121

Query: 470 XXXXXXXXXXXXXQLGPAPSTLP---------------KAPSAIKTNIKAANQIHPYQR 601
                        Q+  APS                  K PS IKTNIK+A+ +HPYQR
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHPYQR 179


>AL139289-5|CAI23381.1|  212|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 212

 Score = 97.1 bits (231), Expect = 5e-20
 Identities = 70/179 (39%), Positives = 90/179 (50%), Gaps = 24/179 (13%)
 Frame = +2

Query: 137 TEGRVPACTHDLVPDLLRTKPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWE 316
           TEGRVP  +H++VPD LRTKP+P+ E++ +Q    A+ +  D AQK I    K+ S++ E
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQEKQLTTDAARIGADAAQKQIQSLNKMCSNLLE 63

Query: 317 IISKGREDWEGESMRSTGMQPTHNIADTHALVTAVGTGKGLR---------PGMANMVGQ 469
            ISK  E+ E ES      + T N  DT+ALV AV  GKGL          PG A   G 
Sbjct: 64  KISK--EERESESGGLRPNKQTFNPTDTNALVAAVAFGKGLSNWRPSGSSGPGQAGQPGA 121

Query: 470 XXXXXXXXXXXXXQLGPAPSTLP---------------KAPSAIKTNIKAANQIHPYQR 601
                        Q+  APS                  K PS IKTNIK+A+ +HPYQR
Sbjct: 122 GTILAGTSGLQQVQMAGAPSQQQPMLSGVQMAQAGQPGKMPSGIKTNIKSAS-MHPYQR 179


>D14811-1|BAA03552.1|  274|Homo sapiens KIAA0110 protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 194 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 328
           KP PQAE+ L++     + +S    Q+ +A+   V+SH+ +  ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144


>CR456893-1|CAG33174.1|  274|Homo sapiens MAD2L1BP protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 194 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 328
           KP PQAE+ L++     + +S    Q+ +A+   V+SH+ +  ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144


>BC002904-1|AAH02904.1|  274|Homo sapiens MAD2L1 binding protein
           protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 194 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 328
           KP PQAE+ L++     + +S    Q+ +A+   V+SH+ +  ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144


>AL136131-1|CAC19507.1|  274|Homo sapiens RP1-261G23.6 protein.
          Length = 274

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 194 KPEPQAEQRLQQFNHKASTLSYDTAQKHIAQFTKVVSHVWEIISK 328
           KP PQAE+ L++     + +S    Q+ +A+   V+SH+ +  ++
Sbjct: 100 KPSPQAEEMLKKKPRATTEVSSRKCQQALAELESVLSHLEDFFAR 144


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,820,027
Number of Sequences: 237096
Number of extensions: 1571965
Number of successful extensions: 3553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3548
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)