Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15c07
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1372 + 33008740-33009130,33009485-33011544 32 0.34
03_02_0397 + 8100646-8101036,8101564-8101701,8101797-8101956,810... 31 0.78
01_05_0021 - 17224430-17224807 30 1.8
12_02_1216 + 27077570-27078313 29 2.4
01_07_0212 + 42018162-42018266,42018371-42018489,42019392-42019905 29 2.4
10_08_0410 - 17716370-17716743,17716839-17716939,17717104-177173... 29 3.2
12_02_0439 + 19096711-19096713,19096819-19096893,19097037-190971... 28 5.5
02_03_0154 + 15797731-15798798 28 5.5
12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,730... 28 7.3
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 28 7.3
01_06_1225 - 35512211-35512240,35512762-35512850,35514162-355143... 28 7.3
>04_04_1372 + 33008740-33009130,33009485-33011544
Length = 816
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 166 SFSSVDSDQSCLTIGNNTNIVECPFTYCTITRQEFID 276
+ SSV + S L + +NT E P + C ITR E++D
Sbjct: 332 NISSVFPNMSFLDVSSNTISGEIPSSLCNITRMEYLD 368
>03_02_0397 +
8100646-8101036,8101564-8101701,8101797-8101956,
8102088-8102220,8102308-8102454,8102567-8102824
Length = 408
Score = 31.1 bits (67), Expect = 0.78
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Frame = +1
Query: 403 GDGIQSIVGGNLSPYP--AYTG-INLLVPGTGSGVNIKMNRVLFFSVIMILIGLHV 561
G+ + S+V G P A+T + LL+ G+GV K+N++L F +I +L+ + V
Sbjct: 83 GEVLSSVVAGVPEPVSGCAFTAALALLIAAGGTGVTDKVNQLLTFVMIGLLLTIEV 138
>01_05_0021 - 17224430-17224807
Length = 125
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +1
Query: 403 GDGIQSIVGGNLSPYPAYTGINLLVPGTGSGVNIKMNR 516
G G+++ GG+ P G+++++PG GSGV++ + R
Sbjct: 42 GSGVETSGGGSKLVVPGGGGVDVILPG-GSGVDVVLPR 78
>12_02_1216 + 27077570-27078313
Length = 247
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 115 LCALFGKAVGRFRCYACSFSSVDSDQSCL 201
LCA + C AC +S++D D +C+
Sbjct: 218 LCAACAAVAAAWACPACGYSNMDMDDTCM 246
>01_07_0212 + 42018162-42018266,42018371-42018489,42019392-42019905
Length = 245
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 369 KSSECWICNFVI*KIRETFAAPCKACDHAYWVYELL 262
++ +C +C + KI A K CDHAY +++ +
Sbjct: 45 RAVDCGVCAICLDKIALQETALVKGCDHAYCIHDYM 80
>10_08_0410 -
17716370-17716743,17716839-17716939,17717104-17717300,
17717392-17717677,17717768-17718004,17718226-17718281,
17720042-17721226
Length = 811
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +1
Query: 253 ITRQEFIDPIGVIASFTRGCESFPDFLNHEVTDPTFRTFYRACTND 390
+ R+ FI + F G ++ FL H+ P + F R TND
Sbjct: 403 LARKHFIHHVFRENDFEDGSQNLYRFLEHDPAIPKYYNFIRGATND 448
>12_02_0439 +
19096711-19096713,19096819-19096893,19097037-19097111,
19097225-19097297,19097536-19097580,19098217-19098328,
19098794-19098866,19099178-19099222,19100216-19100271,
19100370-19100545,19101289-19101476
Length = 306
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 174 ISGFGSIVPDNRKQHEHRGVSIHLLHNYETRVHR 275
ISG S+VP K+ EH GV I LL E + R
Sbjct: 48 ISGEVSVVPVPGKRIEHLGVKIELLGQIELYLER 81
>02_03_0154 + 15797731-15798798
Length = 355
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 225 RGVSIHLLHNYETRVHRPNRRDRKLYTGLRKFPGFFKSRSYRSNIPNFL*SM 380
RG+ +HL + R DR + FPG+ K Y + + +F M
Sbjct: 262 RGLGLHLFNFDMIRERSEEHGDRYFIIDINYFPGYAKMPGYEAALTDFFLEM 313
>12_01_0797 + 7300370-7300506,7300682-7300798,7301903-7302443,
7302885-7304042,7304133-7304291,7304397-7304504,
7305045-7305304,7305936-7306101,7307025-7307050,
7307318-7307402,7307486-7307695,7308815-7308872,
7308964-7309037,7309323-7309373,7309576-7309664,
7310027-7310104,7310164-7310269
Length = 1140
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 552 PD*DHYHRKEQHSIHFDIYSASC 484
P D + +EQH IHFDI C
Sbjct: 940 PGNDMFREQEQHKIHFDINEWRC 962
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 228 GVSIHLLHNYETRVHRPNRRDRKLY 302
G+S+HLL N++ + R + R RK Y
Sbjct: 240 GISLHLLQNFQDVIFRRDFRGRKNY 264
>01_06_1225 -
35512211-35512240,35512762-35512850,35514162-35514312,
35514946-35515011,35515517-35515583,35516517-35516590
Length = 158
Score = 27.9 bits (59), Expect = 7.3
Identities = 8/39 (20%), Positives = 20/39 (51%)
Frame = -3
Query: 303 CKACDHAYWVYELLSRNCAISEWTLHDVRVVSYCQARLI 187
C AC YW + +S + A++ W + +++ + + +
Sbjct: 18 CSACRTPYWALQTVSLSLAVARWHALKITKINFARRQYL 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,850,238
Number of Sequences: 37544
Number of extensions: 370674
Number of successful extensions: 869
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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