Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c07
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    27   0.12 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.1  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   1.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   4.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    22   5.8  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.8  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   5.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   5.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.7  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = -3

Query: 426 DYRLNSITNVAQIICACSIKSSECWICNF-VI*KIRETFAAPCKACDHAYWVYELLSRNC 250
           D  ++S+T+V   +    + S EC + N   I  +  T   P    DH +W Y++L+   
Sbjct: 119 DIVMHSVTSVGIDL---EMPSVECIVFNSGTILCVPFTTYTPVCEYDHTWWPYDILNCTI 175

Query: 249 AISEWT 232
            I+ W+
Sbjct: 176 HIASWS 181


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/60 (23%), Positives = 32/60 (53%)
 Frame = -1

Query: 413 IPSPMLHKSFVHAL*KVRNVGSVTS*FKKSGKLSQPRVKLAITPIGSMNSCLVIVQ*VNG 234
           + +P + + F+H L ++  +    +  K+S   S+P+ ++    +GS +   V+V+  NG
Sbjct: 336 VMAPWVRRVFIHVLPRLLVMRRYNTPSKRSDYDSRPQYQIDKRSMGSHHGQRVMVRTCNG 395


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 148 FRCYACSFSSVDSDQSCLTIGNNTNIVECPFTYCT 252
           F+C  CS+S V+       + +++N+ +     CT
Sbjct: 17  FKCEKCSYSCVNKSMLNSHLKSHSNVYQYRCANCT 51


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 252 NYETRVHRPNRRDRKLYTGLRKFPGFFKSRSYRSN 356
           +YE+ VH   R   + Y  LR +       S R+N
Sbjct: 249 DYESLVHLYTRDQSETYDVLRSWRNLMDEHSNRTN 283


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 137 AFPKSAHKTNTAMRK 93
           AFP +  KTN AM K
Sbjct: 17  AFPSACGKTNLAMMK 31


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 124 VHIKLIQQCVNPFFVDKLSKNARKVKTVCTR 32
           V I  I  CV+   +D+L      V++VC +
Sbjct: 5   VIISAICVCVSAMTLDELKSGLHTVQSVCMK 35


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 424 VGGNLSPYPAYTGINLLVPGTG 489
           + GN   Y AY GI   +P  G
Sbjct: 38  ISGNGKQYEAYEGIPYALPPVG 59


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 128 LGKPSVDSDAMHVV 169
           LGKP++  D+ H+V
Sbjct: 743 LGKPTISPDSRHLV 756


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 424 VGGNLSPYPAYTGINLLVPGTG 489
           + GN   Y AY GI   +P  G
Sbjct: 38  ISGNGKQYEAYEGIPYALPPVG 59


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 451 AYTGINLLVPGTGSGVNIK 507
           AYT   +L PGTG  V +K
Sbjct: 305 AYTVEIVLEPGTGINVTLK 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,313
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)