Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c02
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.28 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.8  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 568 KGCRVIGFAGTDDKVKWLEEEL 633
           KG +VIG A   DK+K L EEL
Sbjct: 30  KGMKVIGIAPQVDKMKTLVEEL 51



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 210 GLQLLPSCTLRPVQLSSRC 266
           GL LLP    RP  L+S+C
Sbjct: 148 GLNLLPMNRNRPAYLASKC 166


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 301 LPDSCYPLIGQQHRLDN*TGRRVQLGKSCKPLNT 200
           LP    PL+G Q   D+ T     L  S KP N+
Sbjct: 489 LPPREAPLVGVQPHQDSATPADQPLDLSAKPKNS 522


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = +1

Query: 43  PTKVEMTSARKYVVKNHFKGVPKQEDYELVEFVIPPLIDGEV 168
           P  +E+T A  Y +           +++ + F   P+ DG++
Sbjct: 762 PYGMELTEAEHYALYTAMAPHATASEFDEMSFYYSPVEDGKI 803


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,173
Number of Sequences: 438
Number of extensions: 3580
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)