Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15c01
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.8  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.0  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   5.0  
SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces pom...    26   6.6  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   8.8  

>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 3/23 (13%)
 Frame = +2

Query: 671 QIAY-SNLERN-C-FDKNVGLSF 730
           Q+ Y SNL++N C FDKNVGL F
Sbjct: 412 QVYYASNLDKNYCMFDKNVGLGF 434


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +3

Query: 594 VNILTLYKFRLTFALSRKLENSH*AYRLRIQIWSAIASTKMWG 722
           +N  +LYK  ++F LS  + N    YR   Q W  +   + +G
Sbjct: 244 LNEFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLRLYEFRRFG 286


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 687 FEYAICTLSASFLTFSITQKLT 622
           F    C +S SFLTF++  KLT
Sbjct: 488 FMLGTCIVSVSFLTFTVYAKLT 509


>SPAPB1A10.15 |||Arv1-like family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 103 LVNVLASEPTQRTTK-AKIINFCISIVSFEL 14
           L N L++   +  TK AK++NFCI I  F +
Sbjct: 63  LFNSLSARTFRNLTKCAKVVNFCILISLFNV 93


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 624 LTFALSRKLENSH*AYRLRIQIWSAIASTKMW 719
           +T +LS+ ++    A R ++ +W+  ++TK+W
Sbjct: 248 VTRSLSKNIKGDGDAVRAQLWLWNRQSNTKIW 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,297
Number of Sequences: 5004
Number of extensions: 52360
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)