Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15b16
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 36 0.018
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 36 0.023
03_06_0471 + 34169562-34169892,34170121-34170347 33 0.16
05_05_0219 + 23371561-23371680,23371799-23372207,23374520-233746... 31 0.66
10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232... 30 1.2
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.2
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 1.5
01_01_0082 + 625198-625719 28 4.7
08_02_1289 - 25923916-25924586,25925148-25926630 27 6.2
04_03_0904 + 20717005-20718087 27 6.2
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 6.2
09_02_0417 - 8915604-8916779,8916863-8917270 27 8.2
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 35.9 bits (79), Expect = 0.018
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +2
Query: 53 KFFMIFVLALLA--MANAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI 226
K ++F L L A +A+A+ +N +E P +PP P+ + Y+P
Sbjct: 11 KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66
Query: 227 DNGAYYVDPPQGRPYFKPTPFPGARGG 307
+ YY DPP Y+ P P P GG
Sbjct: 67 HSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 35.5 bits (78), Expect = 0.023
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 107 PVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFK 277
P + + Y P + P V PP Y P +G P N + Y +PP GRP
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439
Query: 278 PTPFPGARG 304
P P GA G
Sbjct: 440 PPPSYGAGG 448
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 32.7 bits (71), Expect = 0.16
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +2
Query: 146 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 295
Y P P PP Y P+ GY P GAY PP G +P + P +PG
Sbjct: 56 YPPAGGYPGAQYPPSGYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>05_05_0219 +
23371561-23371680,23371799-23372207,23374520-23374635,
23375385-23375855
Length = 371
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Frame = +2
Query: 53 KFFMIFVLALLAMANAQDPVKVVENADSGNGYEPIDNRPYIV----NPPKDYNPNGNGYE 220
+F + V+ LLA+A P A G P + P K+ + NG
Sbjct: 5 RFAAVVVVLLLALALIPGPAAAAGRALQGEKARPSEAAPAPTVAAGGSHKESAKSSNGQN 64
Query: 221 PIDNGAYYVDPPQGRPYFKPTPFP 292
P+ ++ PP +P TP P
Sbjct: 65 PVTKETHHQTPPPAKPPKDQTPPP 88
>10_08_0495 -
18318028-18320399,18322450-18322981,18323097-18323200,
18323653-18323701,18323979-18324119,18324889-18324957,
18325048-18325137,18325301-18326251,18326831-18327502
Length = 1659
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/59 (33%), Positives = 24/59 (40%)
Frame = +2
Query: 95 NAQDPVKVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPY 271
+AQ P V DS GY + RP P Y P G + GA PP G P+
Sbjct: 762 HAQGPYGVPPGGDSRPGYSQPEQRPAYSQP---YPPYGAPPQQPPYGAPSQQPPYGAPH 817
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 164 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 280
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/51 (35%), Positives = 22/51 (43%)
Frame = +2
Query: 137 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF 289
G Y+P R PP+ P Y P G Y PQG+PY P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 152 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 292
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>01_01_0082 + 625198-625719
Length = 173
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +2
Query: 137 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPF-PGARGG 307
G GY P + NP YNP +G+ N Y+ PP G Y + F P A G
Sbjct: 100 GGGYNPTPS----YNPTPGYNPTPSGWFTPPNMPSYLTPP-GTLYPQDPGFRPNAAAG 152
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -3
Query: 418 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 269
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 179 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 292
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 232 RCILRGPSPR-PTLLQAYPFPWCSRW 306
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>09_02_0417 - 8915604-8916779,8916863-8917270
Length = 527
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 167 PYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 286
PY +N P P+ Y P Y PPQ PY P P
Sbjct: 42 PYAMNFPFPPFPH---YPPYTQNLQYAVPPQYAPYTLPPP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,218,666
Number of Sequences: 37544
Number of extensions: 263553
Number of successful extensions: 715
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -