Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15b13
         (141 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   0.77 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   0.77 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   5.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   7.2  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 138 FFCFSIT*YIFYVHFS 91
           F CF++  +I Y+H S
Sbjct: 416 FVCFNLMYWIIYLHIS 431


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 0.77
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 138 FFCFSIT*YIFYVHFS 91
           F CF++  +I Y+H S
Sbjct: 416 FVCFNLMYWIIYLHIS 431


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 113 IFSMYTLVIT 84
           I+S+YT VIT
Sbjct: 141 IYSLYTAVIT 150


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 113 IFSMYTLVIT 84
           I+S+YT VIT
Sbjct: 141 IYSLYTAVIT 150


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 110  IYYVIEKQKK 139
            IY+V+E +KK
Sbjct: 1492 IYFVVEHKKK 1501


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,005
Number of Sequences: 438
Number of extensions: 280
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)