Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt15b04
(622 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068004-1|AAH68004.1| 145|Homo sapiens selenoprotein M protein. 88 2e-17
BC030236-1|AAH30236.1| 145|Homo sapiens selenoprotein M protein. 88 2e-17
BC013421-1|AAH13421.1| 145|Homo sapiens selenoprotein M protein. 88 2e-17
AY043487-1|AAK95397.1| 145|Homo sapiens selenoprotein SelM prot... 88 2e-17
BC016359-1|AAH16359.3| 165|Homo sapiens 15 kDa selenoprotein pr... 45 2e-04
BC005294-1|AAH05294.3| 165|Homo sapiens 15 kDa selenoprotein pr... 45 2e-04
AL121989-1|CAC04186.1| 162|Homo sapiens dJ604K5.1 (15 kDa selen... 45 2e-04
AF288992-1|AAG31557.1| 162|Homo sapiens 15 kDa selenoprotein pr... 45 2e-04
AF288991-1|AAG31556.1| 162|Homo sapiens 15 kDa selenoprotein pr... 45 2e-04
AF267982-1|AAF78966.1| 162|Homo sapiens 15 kDa selenoprotein pr... 45 2e-04
AF051894-1|AAC15478.1| 162|Homo sapiens 15 kDa selenoprotein pr... 45 2e-04
>BC068004-1|AAH68004.1| 145|Homo sapiens selenoprotein M protein.
Length = 145
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/88 (48%), Positives = 54/88 (61%)
Frame = +3
Query: 219 LSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELE 398
LS + AR+E+C G LNRL EVK FV D P Y + +K + GA PELVLLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 399 RLPLSHLNQEQCNELIQSKGFSNNKKSD 482
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>BC030236-1|AAH30236.1| 145|Homo sapiens selenoprotein M protein.
Length = 145
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/88 (48%), Positives = 54/88 (61%)
Frame = +3
Query: 219 LSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELE 398
LS + AR+E+C G LNRL EVK FV D P Y + +K + GA PELVLLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 399 RLPLSHLNQEQCNELIQSKGFSNNKKSD 482
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>BC013421-1|AAH13421.1| 145|Homo sapiens selenoprotein M protein.
Length = 145
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/88 (48%), Positives = 54/88 (61%)
Frame = +3
Query: 219 LSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELE 398
LS + AR+E+C G LNRL EVK FV D P Y + +K + GA PELVLLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 399 RLPLSHLNQEQCNELIQSKGFSNNKKSD 482
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>AY043487-1|AAK95397.1| 145|Homo sapiens selenoprotein SelM
protein.
Length = 145
Score = 88.2 bits (209), Expect = 2e-17
Identities = 43/88 (48%), Positives = 54/88 (61%)
Frame = +3
Query: 219 LSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDRVEVKFISGAPPELVLLGEGDHELE 398
LS + AR+E+C G LNRL EVK FV D P Y + +K + GA PELVLLG ELE
Sbjct: 34 LSGLTRARVETCGGUQLNRLKEVKAFVTQDIPFYHNLVMKHLPGADPELVLLGRRYEELE 93
Query: 399 RLPLSHLNQEQCNELIQSKGFSNNKKSD 482
R+PLS + +E+ N L+Q GF D
Sbjct: 94 RIPLSEMTREEINALVQELGFYRKAAPD 121
>BC016359-1|AAH16359.3| 165|Homo sapiens 15 kDa selenoprotein
protein.
Length = 165
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 78 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 137
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 138 GNIAEELSILKWNTDSVEEFLSEK 161
>BC005294-1|AAH05294.3| 165|Homo sapiens 15 kDa selenoprotein
protein.
Length = 165
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 78 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 137
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 138 GNIAEELSILKWNTDSVEEFLSEK 161
>AL121989-1|CAC04186.1| 162|Homo sapiens dJ604K5.1 (15 kDa
selenoprotein) protein.
Length = 162
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF288992-1|AAG31557.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF288991-1|AAG31556.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF267982-1|AAF78966.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
>AF051894-1|AAC15478.1| 162|Homo sapiens 15 kDa selenoprotein
protein.
Length = 162
Score = 45.2 bits (102), Expect = 2e-04
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +3
Query: 207 SEYELSDIVSARIESCRGCSLNRLPEVKRFVMDDAPNYDR-VEVKFISGAPPELVLLGEG 383
+++E + + I G L R P+V+ FV D P R +++K++ G+ P L LL +
Sbjct: 75 AQFETKKLYAGAILEVCGUKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDN 134
Query: 384 DHELERLPLSHLNQEQCNELIQSK 455
+ E L + N + E + K
Sbjct: 135 GNIAEELSILKWNTDSVEEFLSEK 158
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,973,507
Number of Sequences: 237096
Number of extensions: 1502514
Number of successful extensions: 2588
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2588
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6691573490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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