Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15b04
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    23   1.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    23   1.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.2  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   7.3  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.7  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 200 SDNCTKYYN**KC 162
           SDNC K YN  KC
Sbjct: 120 SDNCNKIYNLAKC 132


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -3

Query: 200 SDNCTKYYN**KC 162
           SDNC K YN  KC
Sbjct: 120 SDNCNKIYNLAKC 132


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 326 TIVVRSIIHHKSFYFWK 276
           TI+ ++I+HH     WK
Sbjct: 120 TIMTKAILHHTGKVVWK 136


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 174 VVIFCAVVALSSEYEL 221
           +V+FCAV  +S++ EL
Sbjct: 6   LVLFCAVAYVSAQAEL 21


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 223 DNSYSEDKATTAQNIT 176
           DN+ +EDK  TAQ  +
Sbjct: 103 DNAKNEDKCLTAQKFS 118


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 232 TMSDNSYSEDKATTAQNITTDKSVIFILNKN-LHLSN 125
           T + +  +E   TT+  I+     +F++NK+ LH  N
Sbjct: 381 TTTASPTTEPSTTTSTTISQKHIKVFVVNKDILHEHN 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,910
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)