Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15b03
         (209 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         20   3.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    20   3.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    20   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    19   4.9  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    19   6.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    19   6.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    19   8.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   8.5  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 65  DLEYYNDKIFIYNNFYN 15
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 65  DLEYYNDKIFIYNNFYN 15
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 19.8 bits (39), Expect = 3.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 65  DLEYYNDKIFIYNNFYN 15
           D++ ++DKIF+    YN
Sbjct: 68  DIDQWHDKIFVTMLRYN 84


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 4.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 41  IFIYNNFYNSF 9
           IFIYN+F   F
Sbjct: 103 IFIYNSFNTGF 113


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 53  YNDKIFIYNNFYNS 12
           YN+    YNN YN+
Sbjct: 94  YNNNYNNYNNNYNT 107


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.0 bits (37), Expect = 6.4
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 53  YNDKIFIYNNFYNSF 9
           YN+    YNN+ N++
Sbjct: 330 YNNNYNNYNNYNNNY 344


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 53  YNDKIFIYNNFYNSFMF 3
           YN+K    NN YN  ++
Sbjct: 100 YNNKYNYNNNNYNKKLY 116


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 18.6 bits (36), Expect = 8.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 41  IFIYNNFYNSF 9
           + IYNN  NSF
Sbjct: 211 LIIYNNSDNSF 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,263
Number of Sequences: 438
Number of extensions: 411
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3039192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)