Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15b01
         (623 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF064334-6|ABJ99324.1|  226|Homo sapiens ATP synthase F0 subunit...    30   5.8  
EF064333-6|ABJ99311.1|  226|Homo sapiens ATP synthase F0 subunit...    30   5.8  

>EF064334-6|ABJ99324.1|  226|Homo sapiens ATP synthase F0 subunit 6
           protein.
          Length = 226

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 33/141 (23%), Positives = 45/141 (31%)
 Frame = +3

Query: 156 MITNLFSIFDPSTNLINLPIN*IRTILGLLFIPYRF*LIPNRHFII*NFISKKLHNEFKT 335
           M  NLF+ F P T ++ LP   +  +   L IP    LI NR      ++ K    +  T
Sbjct: 1   MNENLFASFIPPT-ILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMT 59

Query: 336 LLKNNYXXXXXXXXXXXXXXXXXXXXXXXXPYIFTRTRHXXXXXXXXXXXXXXXXXXGXI 515
           +  N                          P+ FT T                    G  
Sbjct: 60  M-HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFR 118

Query: 516 KNTNHIFIHIIPQGTPYILIP 578
               +   H +PQGTP  LIP
Sbjct: 119 SKIKNALAHFLPQGTPTPLIP 139


>EF064333-6|ABJ99311.1|  226|Homo sapiens ATP synthase F0 subunit 6
           protein.
          Length = 226

 Score = 30.3 bits (65), Expect = 5.8
 Identities = 33/141 (23%), Positives = 45/141 (31%)
 Frame = +3

Query: 156 MITNLFSIFDPSTNLINLPIN*IRTILGLLFIPYRF*LIPNRHFII*NFISKKLHNEFKT 335
           M  NLF+ F P T ++ LP   +  +   L IP    LI NR      ++ K    +  T
Sbjct: 1   MNENLFASFIPPT-ILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMT 59

Query: 336 LLKNNYXXXXXXXXXXXXXXXXXXXXXXXXPYIFTRTRHXXXXXXXXXXXXXXXXXXGXI 515
           +  N                          P+ FT T                    G  
Sbjct: 60  M-HNTKGRTWSLMLVSLIIFIATTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGAVIMGFR 118

Query: 516 KNTNHIFIHIIPQGTPYILIP 578
               +   H +PQGTP  LIP
Sbjct: 119 SKIKNALAHFLPQGTPTPLIP 139


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,108,895
Number of Sequences: 237096
Number of extensions: 737954
Number of successful extensions: 4588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4588
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)