Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15a01
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical pr...    30   0.75 
U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical pr...    29   1.3  
AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z66522-4|CAC70090.1|  349|Caenorhabditis elegans Hypothetical
           protein F14E5.6 protein.
          Length = 349

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +3

Query: 237 TLEICTNSA**ANFEEWVTS*EVPSCSA*EEKMTKACH*TKADNHKGHTGMAWCC 401
           T+ I TN A   N ++ + +  V SC   E  M KAC   +ADNH+  + + + C
Sbjct: 192 TVPITTNHA---NQDKLLNT-PVHSCDIFESAMEKACPNLEADNHRDESAIMYEC 242


>U61954-3|AAK29809.1|  863|Caenorhabditis elegans Hypothetical
           protein F41H10.6a protein.
          Length = 863

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 208 RKYYSIIXGVRLRFAQIQHSKLILKNG 288
           +KY+SI+ G ++    + +SKLI KNG
Sbjct: 786 QKYWSILKGFQIIIGSVLNSKLINKNG 812


>AC006774-5|AAF60618.1|  363|Caenorhabditis elegans Hypothetical
           protein Y46H3A.4 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 138 NFLVIVDFCFYYII 179
           NFLV + +CFYY++
Sbjct: 237 NFLVFLSWCFYYLL 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,777,465
Number of Sequences: 27780
Number of extensions: 127377
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)