Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt15a01
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   5.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   5.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   5.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 9   SFLRLRKRNSLTICSRDVAALP 74
           SFL LR+ ++L I   +V ALP
Sbjct: 142 SFLGLRELHTLEIVESNVQALP 163


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 376 AIQVWHGVVMC 408
           A+ VW GV MC
Sbjct: 362 AMNVWDGVCMC 372


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 376 AIQVWHGVVMC 408
           A+ VW GV MC
Sbjct: 331 AMNVWDGVCMC 341


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 376 AIQVWHGVVMC 408
           A+ VW GV MC
Sbjct: 382 AMNVWDGVCMC 392


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 376 AIQVWHGVVMC 408
           A+ VW GV MC
Sbjct: 331 AMNVWDGVCMC 341


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 411 PAHNNTMPYLYGLCDCXP 358
           PAH+ +  Y +  C C P
Sbjct: 283 PAHSKSSDYGFTECRCDP 300


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 370 TKAIQVWHGVVM 405
           TKAI +W GV +
Sbjct: 301 TKAIDIWTGVCL 312


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 370 TKAIQVWHGVVM 405
           TKAI +W GV +
Sbjct: 301 TKAIDIWTGVCL 312


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,697
Number of Sequences: 438
Number of extensions: 1508
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)