Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14o05
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.75 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.0 bits (52), Expect = 0.75
 Identities = 12/61 (19%), Positives = 30/61 (49%)
 Frame = +3

Query: 462 IIICVYKVFAVLCXMLCNQLKFNEMESFSNIIN*FVITILQ*LEXVSQVYFSKIILVTYH 641
           III  Y  F ++C +    +  N + + + ++  +++T++     +  ++ + I L T  
Sbjct: 281 IIIMWYSPFGIMCLIAGKIMSINNLTATAQMLGLYMVTVI-----LGLLFHALITLPTIF 335

Query: 642 W 644
           W
Sbjct: 336 W 336


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 164 AXSTTGSKTRPTEKIRRETQ 223
           A  TTG+ T PT ++R+  Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,672
Number of Sequences: 438
Number of extensions: 3295
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)