Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14m07
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    31   0.15 
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   0.80 
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    27   1.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    27   2.4  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   4.2  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    26   4.2  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   4.2  
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch...    26   5.6  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   7.4  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    25   7.4  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   9.8  
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    25   9.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   9.8  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = -1

Query: 663 HQPVRLHGRQPYKWNVEYRSITSTQFAIHPLNDNNIEGLIRVLEQLFNLLMLQSSFLYLF 484
           + P  L  +QP+ + +  +++  ++F  H L DN+ E   ++L    +L +   SF  +F
Sbjct: 492 NDPNNLEKQQPHSFPLRKQNVAQSEFPKHSLRDNS-ENAPQILSSFHDLSLQNESFDEMF 550

Query: 483 H 481
           +
Sbjct: 551 N 551


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 16/52 (30%), Positives = 30/52 (57%)
 Frame = +1

Query: 418  DLKRVLDKEVNVIDNGFMFYFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVE 573
            +LK +L+++ N +    M   M+Q+ +A  E  +V   L+   K +D++IVE
Sbjct: 989  ELKELLEEKENALI--MMEEEMRQVNDANTELLRVNATLKSQLKNYDMIIVE 1038


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 424 KRVLDKEVNVIDNGFMFYFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVE-WMYCELGAS 600
           +R L+    ++D   +  F   I    L      K+LE  +  FD  + E W++C LG  
Sbjct: 62  RRCLNLRKRLMDISELAAFFDSIHREALNSSF--KILEFKDIEFDDPVTEIWLFCRLGYP 119

Query: 601 YAAVFD 618
             A+F+
Sbjct: 120 LCALFN 125


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 564 NNIEGLIRVL-EQLFNLLMLQSSFLYLFHEIKHKPVVYYVYLF 439
           N++   IR +   LF L +    + Y+ H+ KH P  Y VY F
Sbjct: 155 NSMASRIRNIGSALFVLTIFPLIYWYIQHKFKHIPGAYTVYAF 197


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -1

Query: 618 VEYRSITSTQFAIHPLNDNNIEGLIRVLEQLFNLLMLQSSFLYLFHEIKHKPVVYYVY 445
           +EY    +T FAI     ++I  L  VL  L +L ++   +  L H ++ + + + +Y
Sbjct: 519 IEYTEDFATGFAISGEISHSINNLEFVLYSLSSLFLMMLKWFRLSHVLRFERLAFLLY 576


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 475 YFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVEWMYCELGASYAAVFDVPLIWLSTMEP 651
           Y M+QI +  +   +V   L DP++   +  +E    E+G      F+  L W+S   P
Sbjct: 573 YLMRQIVQIFVSIGRVSDFLNDPDEVDPVNTIEDTSQEIG-----FFNASLTWVSNPSP 626


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 490 IQEATLEHEQVKKLLEDPNKTFDIVIVEWMYCELGASYAAVFDVPL---IWLST 642
           IQ +TLE     KL +  +K +D+  V W            FDV +    W+ST
Sbjct: 155 IQVSTLETTDPNKLWKVSSKQYDLREVTWFLDHSSLISRLYFDVKIDTFFWMST 208


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -2

Query: 512 CSRVASCICFMK*NINPLSITFTSLSRTLFKSNPPLGIKRIL 387
           C ++  C+  +K       IT       LF+ NP  G++ +L
Sbjct: 98  CEKIVLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVRELL 139


>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
           dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -1

Query: 633 PYKWN-VEYRSITSTQFAIHPLNDNNIEGLIRVLEQLF-NLLMLQSSFLYLFHEIKHKPV 460
           P  WN +EYR +    +AI P N   I G +     L  N+++++ S     H +    +
Sbjct: 171 PGVWNRMEYRPLEGFVYAITPFNFTAIAGNLAAAPLLMGNVVLMKPS----DHAVLSSYI 226

Query: 459 VYYVY 445
           VY ++
Sbjct: 227 VYQIF 231


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +1

Query: 532 LEDPNKTFDIVIVEWMYCELGASYAAVFD 618
           LE PN  FD++I++ ++ E+ +    +++
Sbjct: 99  LEHPNNFFDVIILQTVFSEISSKSIPLYN 127


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 461  LSITFTSLSR-TLFKSNPPLGIKRILLLTST*VRFGW*LSSTKGVTYVTS*PAFRRCFTT 285
            +++ FT +   TL     P+ ++  +   +T +R    L +T G    T   AF  CF T
Sbjct: 1331 IAMVFTDIKNSTLLWERHPIAMRSAIKTHNTIMRRQ--LRATGGYEVKTEGDAFMVCFQT 1388

Query: 284  LYPRILW 264
            +   +LW
Sbjct: 1389 VPAALLW 1395


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 124 DFLLLYCVYDQKENMFKLTFLVCCILATQSVSDAYKILVVF 246
           D+L ++C   +K ++  L  L+C  L   +   A KIL  F
Sbjct: 380 DYLFMHCNNGEKTSLHLLRTLICMKLDFSNAQLAAKILFHF 420


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 581 YIHSTITISKVLFGSSSNFLTCSC 510
           Y+++T+T SKV F S+ + LT  C
Sbjct: 22  YVYNTLTHSKVPFVSNGSNLTWYC 45


>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 475 YFMKQIQEATLEHEQVKKLLEDPNKTFDIVIVEWMYCEL 591
           Y  + ++ ATL  E   K  E+P+  F++  V++  CEL
Sbjct: 759 YLKESVRYATLALE---KNPENPSLLFNVAFVQFQLCEL 794


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +1

Query: 196 ILATQSVSDAYKILVVFPMPGKSHSILGYSVVK-HLLKAGHEVTYVTPFVEDNHHPNLTQ 372
           ++   + +D  K+  +   P  S  + G ++ +   L  G+   Y+T    DN+  N+  
Sbjct: 515 LVFVNTTTDVNKLPSIIEFPAAS-KLRGTAISQIKSLSNGNFSLYMTGNFSDNYGNNVVY 573

Query: 373 VDVSSNMRLIPKGGLD 420
           +D  +++   P  GL+
Sbjct: 574 MDSLNHLHSFPNNGLN 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,490
Number of Sequences: 5004
Number of extensions: 57346
Number of successful extensions: 176
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)