Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14m05
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    29   0.70 
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    28   1.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    28   1.2  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.1  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    27   2.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    27   2.8  
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc...    27   2.8  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    27   3.7  
SPAC12G12.02 ||SPAC630.01c|rRNA processing protein, unnamed|Schi...    26   4.9  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.5  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   6.5  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = +2

Query: 380  GQAGAFEKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVK 559
            G+    +KK +    +L+EK+F P S   KP K H V     D+E+EN     E S  V 
Sbjct: 1090 GELVVSKKKKKDLIVELKEKKFQPIS---KPKKGHLV-----DLEVENALAEEEQSGDVS 1141

Query: 560  ID 565
             D
Sbjct: 1142 QD 1143


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +2

Query: 287 NSNAEDSRTVCKYGEKCYQKNPE---HHKKYKHPGQAGAFEKKNEKNPGKLREKRFNPYS 457
           NSN +  R+  +  ++ Y +  +       Y+   +    E+ +  +    R +RF+ Y 
Sbjct: 331 NSNRDRKRSSSRSDDREYHRRSDGRYDRSNYRDDYRHRRKERDHRDDQSSFRNERFSNYY 390

Query: 458 SDDKP-AKQHKVGDKKPDIELENGS 529
            DD+   K+   G+K  D  L + S
Sbjct: 391 GDDRSYHKRRNTGNKNCDDHLRDKS 415


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 398 EKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTV-N 574
           +  ++K+PGKL  K      S   P  + K  +  P  ++E  +  S+ S ++ +DT+ N
Sbjct: 514 DNSSQKSPGKLSSKGLLNSFSPISPFSKSKSHNHHPSSQVEKSTSNSKGS-MLPLDTLYN 572

Query: 575 PIHALKLPKNITYY 616
              + +L +++  Y
Sbjct: 573 NKLSFRLDESLVRY 586


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 321 NTAKSVIKKIPSTTKNTN--IQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK*E 494
           +TA + +   P T+KN    ++ +   +RK+   + E ++KN+    ++MT+ +  ++  
Sbjct: 107 STAATFMFCFPKTSKNIGAFVEKRFPAIRKQRMLVLEQTQKNIQNAQKSMTSAVEGVQKH 166

Query: 495 IKNLTSN*KMD 527
            +N     K D
Sbjct: 167 YENAVKKIKGD 177


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 151 LGTNIQIISVESKINNHLFCTFMISYYLCGLNVAYEF*LTLRHF 20
           L T  ++I  ++ +    FCTF + +Y     V      TL HF
Sbjct: 163 LPTRAELILFDNVLGKAFFCTFQLLFYAFRPLVVRRLPFTLMHF 206


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 623 SDHSVLKELFLVKMPSDFYKFFDCLNTDDAIVKIWFIC 736
           +D  +L  +    + S +Y+F++C  T DA +++   C
Sbjct: 881 ADDKLLLPVSWYNLGSSYYRFYECDTTKDATLQVAINC 918


>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 438

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = +2

Query: 467 KPAKQHKVGDKKPDIELENGSGTSESSTVVKIDT--VNPIHALKLPKNITYYDSSD 628
           KP  +      K D+E+E  +G  E++  ++ DT  V  I      K     DSSD
Sbjct: 41  KPVAKETTVLTKKDVEVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLNDSSD 96


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 354 STTKNTNIQGKQELLRKKMRRIPESSEKNVLIHIRAMTNLLSSIK 488
           S  K  N++GKQ+LL  +  ++ E        H+  +  LLS ++
Sbjct: 231 SAKKLLNVEGKQKLLASEFLKLGERPGGFFRTHLITLYELLSEVR 275


>SPAC12G12.02 ||SPAC630.01c|rRNA processing protein,
           unnamed|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +2

Query: 287 NSNAEDSRTVCKYGEKCYQKNPEHHKK--YKHPGQAGAFEKKNEKNPGKLREKRFNPYSS 460
           N   E  R +    E+      EH K+  ++   +   FE+K  +   K  EK     + 
Sbjct: 31  NIRVEHERALLGLQEQLSMAQLEHKKQKIFERYKKVRFFERKKAERRIKQLEKSLKDETM 90

Query: 461 DDKPAKQHKVGDKKPDIEL 517
           DD+  KQ +   +K  I+L
Sbjct: 91  DDEKRKQCEKSMRKCQIDL 109


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +2

Query: 398 EKKNEKNPGKLREKRFNPYSSDDKPAKQHKVGDKKPDIELENGSGTSESSTVVKIDTVN 574
           E+KNEKNP +   +     ++     +QH   ++         +  +ES+T   ++ +N
Sbjct: 62  EEKNEKNPIEEANEENESVAATSNERQQHDASNQPSQAAQTTINKNTESATPKTVNEIN 120


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 380 LDVCIFCGAR-DFFDNTFRRICIQFSNLQHLNYKLLTSL 267
           L VC  C A     DN  RR+   FS   HL Y +L ++
Sbjct: 187 LQVCDICSAYLSRLDND-RRLADHFSGKMHLGYAMLRNI 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,335
Number of Sequences: 5004
Number of extensions: 64753
Number of successful extensions: 249
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)