Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14j20
         (149 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    19   5.4  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    19   5.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        18   9.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        18   9.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        18   9.4  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 26  VTSSTVCDLTWKY 64
           VTS+  C++ W++
Sbjct: 119 VTSTEGCEVAWQF 131


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = +2

Query: 26  VTSSTVCDLTWKY 64
           VTS+  C++ W++
Sbjct: 93  VTSTEGCEVAWQF 105


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 37  RRCHSGY 17
           + CHSGY
Sbjct: 494 KSCHSGY 500


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 37  RRCHSGY 17
           + CHSGY
Sbjct: 494 KSCHSGY 500


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.2 bits (35), Expect = 9.4
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -2

Query: 37  RRCHSGY 17
           + CHSGY
Sbjct: 494 KSCHSGY 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,088
Number of Sequences: 438
Number of extensions: 247
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2530857
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)