Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14j07
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC003353-1|AAH03353.1| 135|Homo sapiens mediator of RNA polymer... 183 5e-46
AY598325-1|AAT06736.1| 135|Homo sapiens L6 protein. 183 5e-46
AY453397-1|AAS47514.1| 135|Homo sapiens transformation-related ... 183 5e-46
AY277599-1|AAQ18038.1| 135|Homo sapiens transformation-related ... 183 5e-46
U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein. 34 0.63
AF057300-1|AAD50326.1| 1173|Homo sapiens truncated RAD50 protein... 34 0.63
AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein. 34 0.63
Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50 p... 33 0.83
EF068222-1|ABK64187.1| 2358|Homo sapiens jumonji domain-containi... 32 2.5
BX537954-1|CAD97921.1| 2210|Homo sapiens hypothetical protein pr... 32 2.5
AL713895-3|CAI10950.1| 759|Homo sapiens novel protein protein. 32 2.5
AL607128-2|CAI14188.1| 759|Homo sapiens novel protein protein. 32 2.5
AK027280-1|BAB55015.1| 427|Homo sapiens protein ( Homo sapiens ... 32 2.5
>BC003353-1|AAH03353.1| 135|Homo sapiens mediator of RNA polymerase
II transcription, subunit 10 homolog (NUT2, S. cerev
protein.
Length = 135
Score = 183 bits (446), Expect = 5e-46
Identities = 80/129 (62%), Positives = 107/129 (82%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+ +VTGLQ+IDK + Q+HD
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD 60
Query: 327 IHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
I VP EVF+YIDQGRNPQLYTK+C+++ALAKNE+VKGKID+ K+FK+ L+ ELSK FP +
Sbjct: 61 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED 120
Query: 507 ITKYKALRG 533
+ KY+++RG
Sbjct: 121 MAKYRSIRG 129
>AY598325-1|AAT06736.1| 135|Homo sapiens L6 protein.
Length = 135
Score = 183 bits (446), Expect = 5e-46
Identities = 80/129 (62%), Positives = 107/129 (82%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+ +VTGLQ+IDK + Q+HD
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD 60
Query: 327 IHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
I VP EVF+YIDQGRNPQLYTK+C+++ALAKNE+VKGKID+ K+FK+ L+ ELSK FP +
Sbjct: 61 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED 120
Query: 507 ITKYKALRG 533
+ KY+++RG
Sbjct: 121 MAKYRSIRG 129
>AY453397-1|AAS47514.1| 135|Homo sapiens transformation-related
protein 20 protein.
Length = 135
Score = 183 bits (446), Expect = 5e-46
Identities = 80/129 (62%), Positives = 107/129 (82%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+ +VTGLQ+IDK + Q+HD
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD 60
Query: 327 IHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
I VP EVF+YIDQGRNPQLYTK+C+++ALAKNE+VKGKID+ K+FK+ L+ ELSK FP +
Sbjct: 61 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED 120
Query: 507 ITKYKALRG 533
+ KY+++RG
Sbjct: 121 MAKYRSIRG 129
>AY277599-1|AAQ18038.1| 135|Homo sapiens transformation-related
protein 17 protein.
Length = 135
Score = 183 bits (446), Expect = 5e-46
Identities = 80/129 (62%), Positives = 107/129 (82%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
M+ ++LE LE F+EN+RQ+ IIVSDFQP Q+ LNQK+ +VTGLQ+IDK + Q+HD
Sbjct: 1 MAEKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHD 60
Query: 327 IHVPTEVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
I VP EVF+YIDQGRNPQLYTK+C+++ALAKNE+VKGKID+ K+FK+ L+ ELSK FP +
Sbjct: 61 ITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPED 120
Query: 507 ITKYKALRG 533
+ KY+++RG
Sbjct: 121 MAKYRSIRG 129
>U63139-1|AAB07119.1| 1312|Homo sapiens Rad50 protein.
Length = 1312
Score = 33.9 bits (74), Expect = 0.63
Identities = 20/96 (20%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
+S+ +++L +++ E V + + FQ + + ++N+K S +++ +K +V +
Sbjct: 894 LSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKN 953
Query: 327 IH-VPTEVFDYIDQGRNPQLYTKDC-IDKALAKNEE 428
IH ++ +YI G++ K+ ++K +A+ E
Sbjct: 954 IHGYMKDIENYIQDGKDDYKKQKETELNKVIAQLSE 989
>AF057300-1|AAD50326.1| 1173|Homo sapiens truncated RAD50 protein
protein.
Length = 1173
Score = 33.9 bits (74), Expect = 0.63
Identities = 20/96 (20%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
+S+ +++L +++ E V + + FQ + + ++N+K S +++ +K +V +
Sbjct: 755 LSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKN 814
Query: 327 IH-VPTEVFDYIDQGRNPQLYTKDC-IDKALAKNEE 428
IH ++ +YI G++ K+ ++K +A+ E
Sbjct: 815 IHGYMKDIENYIQDGKDDYKKQKETELNKVIAQLSE 850
>AF057299-1|AAD50325.1| 1312|Homo sapiens RAD50-2 protein protein.
Length = 1312
Score = 33.9 bits (74), Expect = 0.63
Identities = 20/96 (20%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
+S+ +++L +++ E V + + FQ + + ++N+K S +++ +K +V +
Sbjct: 894 LSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKN 953
Query: 327 IH-VPTEVFDYIDQGRNPQLYTKDC-IDKALAKNEE 428
IH ++ +YI G++ K+ ++K +A+ E
Sbjct: 954 IHGYMKDIENYIQDGKDDYKKQKETELNKVIAQLSE 989
>Z75311-1|CAA99729.1| 1318|Homo sapiens RAD50 homologue hsRAD50
protein.
Length = 1318
Score = 33.5 bits (73), Expect = 0.83
Identities = 19/96 (19%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Frame = +3
Query: 147 MSSPLENLETQLEMFIENVRQIRIIVSDFQPQGQSVLNQKIQSLVTGLQEIDKLKSQVHD 326
+S+ +++L +++ E V + + FQ + + ++N+K S +++ +K +V +
Sbjct: 900 LSTEVQSLYREIKDAKEQVSPLETTLEKFQQEKEELINKKNTSNKIAQDKLNDIKEKVKN 959
Query: 327 IH-VPTEVFDYIDQGRNPQLYTKDC-IDKALAKNEE 428
IH ++ ++I G++ + K+ ++K +A+ E
Sbjct: 960 IHGYMKDIENHIQDGKDDYMKQKETELNKVIAQLSE 995
>EF068222-1|ABK64187.1| 2358|Homo sapiens jumonji domain-containing
1 C splice variant protein.
Length = 2358
Score = 31.9 bits (69), Expect = 2.5
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 342 EVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
E +DYI +G NP+ K ++K K EE + K+ + KR +T +S+ S++ +E
Sbjct: 148 EKYDYISRGENPKGKNKHLMNKR-RKPEEDEKKL-NMKRLRTDNVSDFSESSDSE 200
>BX537954-1|CAD97921.1| 2210|Homo sapiens hypothetical protein
protein.
Length = 2210
Score = 31.9 bits (69), Expect = 2.5
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 342 EVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
E +DYI +G NP+ K ++K K EE + K+ + KR +T +S+ S++ +E
Sbjct: 111 EKYDYISRGENPKGKNKHLMNKR-RKPEEDEKKL-NMKRLRTDNVSDFSESSDSE 163
>AL713895-3|CAI10950.1| 759|Homo sapiens novel protein protein.
Length = 759
Score = 31.9 bits (69), Expect = 2.5
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 342 EVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
E +DYI +G NP+ K ++K K EE + K+ + KR +T +S+ S++ +E
Sbjct: 330 EKYDYISRGENPKGKNKHLMNKR-RKPEEDEKKL-NMKRLRTDNVSDFSESSDSE 382
>AL607128-2|CAI14188.1| 759|Homo sapiens novel protein protein.
Length = 759
Score = 31.9 bits (69), Expect = 2.5
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 342 EVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
E +DYI +G NP+ K ++K K EE + K+ + KR +T +S+ S++ +E
Sbjct: 330 EKYDYISRGENPKGKNKHLMNKR-RKPEEDEKKL-NMKRLRTDNVSDFSESSDSE 382
>AK027280-1|BAB55015.1| 427|Homo sapiens protein ( Homo sapiens
cDNA FLJ14374 fis, clone HEMBA1001635, weakly similar to
TESTIS SPECIFIC PROTEIN A. ).
Length = 427
Score = 31.9 bits (69), Expect = 2.5
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +3
Query: 342 EVFDYIDQGRNPQLYTKDCIDKALAKNEEVKGKIDSYKRFKTHLLSELSKTFPNE 506
E +DYI +G NP+ K ++K K EE + K+ + KR +T +S+ S++ +E
Sbjct: 330 EKYDYISRGENPKGKNKHLMNKR-RKPEEDEKKL-NMKRLRTDNVSDFSESSDSE 382
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,402,135
Number of Sequences: 237096
Number of extensions: 1639216
Number of successful extensions: 2942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2942
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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