Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt14j06
         (243 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   0.71 
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   2.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   6.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   6.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   6.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   6.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 0.71
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 106 HEHELAAYPARIDLPTPLTST 168
           HE  + ++P    LPTP+T T
Sbjct: 143 HEKLVESFPRGGSLPTPVTPT 163


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 1.6
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 112 HELAAYPARIDLP 150
           H++ ++PAR+ LP
Sbjct: 616 HQIFSFPARLSLP 628


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -2

Query: 110  SCGRRPVGASRN 75
            S GRR VG++RN
Sbjct: 1839 SVGRRSVGSARN 1850


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 65  VLYSYATHRRVDDRTSMS 118
           +L + ATH  +D RTS S
Sbjct: 317 LLETIATHMGLDTRTSTS 334


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 42  ASSLVFSECCTVTRRTDGSTTARA 113
           ASSL+F+  C +T      T  RA
Sbjct: 28  ASSLIFTILCILTLALTLVTLVRA 51


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 42  ASSLVFSECCTVTRRTDGSTTARA 113
           ASSL+F+  C +T      T  RA
Sbjct: 28  ASSLIFTILCILTLALTLVTLVRA 51


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 42  ASSLVFSECCTVTRRTDGSTTARA 113
           ASSL+F+  C +T      T  RA
Sbjct: 28  ASSLIFTILCILTLALTLVTLVRA 51


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 6.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 42  ASSLVFSECCTVTRRTDGSTTARA 113
           ASSL+F+  C +T      T  RA
Sbjct: 28  ASSLIFTILCILTLALTLVTLVRA 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,593
Number of Sequences: 438
Number of extensions: 945
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4149981
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)