Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt14j02
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 44 1e-05
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 34 0.015
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 30 0.33
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom... 28 1.0
SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 27 3.1
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 26 4.1
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 25 7.2
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ... 25 7.2
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 7.2
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +1
Query: 226 NERLSRAQRAVEANIYDVDSWSLLVREAQARNIND-VRTMYEKLITAFPTTGRYWKIYIE 402
N+ + + + ++ N D+ SW LV E ++ ++ +R YE+++ FP R W YI
Sbjct: 54 NDLVGQLRDKIQENPNDISSWYALVEEYGSKGKHEELRETYEQMLRPFPYVPRVWVDYIS 113
Query: 403 QEMKARNFERVE 438
E+ +F VE
Sbjct: 114 SELAFNDFHAVE 125
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 247 QRAVEANIYDVDSWSLLVR-EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARN 423
+RA++ + + W + E + RNIN R ++++ +T P + W Y+ E N
Sbjct: 94 ERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGN 153
Query: 424 FERVEKV 444
+V
Sbjct: 154 ITGCRQV 160
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 304 EAQARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKARNFERVEKV 444
E + R+++E+ + T W YIE EMK RN +
Sbjct: 80 ELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNL 126
>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 972
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 310 QARNINDVRTMYEKLITAFPTTGRYWKIYIEQEMKAR 420
Q N+ VR +EK +T F W++YI E K R
Sbjct: 786 QFYNLPKVRPFFEKGVTLFSANTAIWEVYIFFESKLR 822
>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1690
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 334 RTMYEKLITAFPTTGRYWKIYIEQEMK 414
RT++E L++++P W + I+ EMK
Sbjct: 1602 RTIFEGLLSSYPKRLDLWNVLIDMEMK 1628
>SPAC29A4.14c |||peroxin-3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 346
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 511 EIDKYYILI-TVCWCVAYLDDISKRMSMIVLYKKQLVVLNE 630
EI K YI+ + + V L+D + +M ++ K +L+ LNE
Sbjct: 243 EIPKQYIVTGNLLYRVLELEDFATQMDASIVMKNELIALNE 283
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/44 (20%), Positives = 21/44 (47%)
Frame = +1
Query: 271 YDVDSWSLLVREAQARNINDVRTMYEKLITAFPTTGRYWKIYIE 402
Y + SW ++ + + ++E+ + P + + WK Y+E
Sbjct: 30 YSLKSWLRYIKTHEGSTLEKRVLLFERACSELPGSYKIWKSYLE 73
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 492 ISQIALFFLNLLSLYTDLFDSFKISRFHLL 403
+ Q++ + NLL+L + + D K SR+H L
Sbjct: 322 VHQLSSSYTNLLNLRSAICDWLKFSRYHYL 351
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 351 VDNGIPDHRTLLENIYRTG 407
V GIP+H+T+ E IY+ G
Sbjct: 141 VTYGIPNHKTVRELIYKRG 159
>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 523 YYILITVCWCVAYLDDISK 579
+ IL TVCWCV + I K
Sbjct: 22 FAILGTVCWCVQLIPQIIK 40
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 337 TMYEKLITAFPTTGRYWKIYIEQEMK 414
T YE+ ITAF Y KI++E+ K
Sbjct: 451 TKYEQKITAFKHAHIYDKIFLEEARK 476
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,906
Number of Sequences: 5004
Number of extensions: 60603
Number of successful extensions: 160
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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